Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] bfactor, freeR problems!!

- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: FreeR flag value swap
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-10-01
Next message:
Subject: Import and merge data collected from TWO sources?
From: Brenda Patterson ucbccka {- at -} UCL {- dot -} AC {- dot -} UK
Date: 2007-10-01


Subject: Re: bfactor, freeR problems!!
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-10-01

Yes to keeping the same FreeR
Bfactors - I doubt if it matters, but I usually start a new data set by
setting Bs to the Wilson suggestion..

Twinned data - maybe you ought to use SHELXL to refine it?

Eleanor

john kryst wrote:
> Hi all !!
>
> I am working on some deletion mutants. Mutants crystallized in
> the same space group with similar cell dimensions. My questions are the
> following??
>
> 1. Is the free R flag has to be maintained across all the mutants with
> respect to the native.
> 2. Does B-factor has to be flattened (say 30) before starting the
> refinement of the each mutant.
> 3. One of my mutant is twinned. should i maintain the same free R flag
> without worrying about the twinning ???
>
> Thanks for your inputs.
>
> with warm regards
> John
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: FreeR flag value swap
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-10-01
Next message:
Subject: Import and merge data collected from TWO sources?
From: Brenda Patterson ucbccka {- at -} UCL {- dot -} AC {- dot -} UK
Date: 2007-10-01



ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd