Re: [ccp4bb] Morphing with mutations

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CCP4bb <-- 2007 <-- October 2007 <-- 03 October 2007

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Subject: Postdoctoral Positions at the Burnham Institute
From: "Jin, Rongsheng" rsjin {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-10-02

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Subject: Re: Morphing with mutations
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2007-10-03

Subject: Re: Morphing with mutations
From: "Mario A {- dot -} Bianchet" bianchet {- at -} JULIET {- dot -} MED {- dot -} JHMI {- dot -} EDU
Date: 2007-10-03

Gerard
What about to do a cartesian morphing with the mutated
residue added (or removed) atoms having initial ( or final) coordinates
taken from previous common atom?
Will work? Coloring may be a factor... but with a manual
editing perhaps...
Mario
Gerard DVD Kleywegt wrote:

>> Does anybody know, please, any alternative program or trick to
>> transfom the side chain of a residues into its mutated counterpart,
>> please, with a nice and smooth visual effect? Does LSQMAN, for
>> example, sort this problem out? It is not clear to me reading the
>> manual.
>
>
> no, it won't. however, in certain cases you can fool it into doing
> silly transmogrifications like in the animated hic-up logo
> (http://xray.bmc.uu.se/hicup/hicup_anim.gif). this was generated as a
> Cartesian morph from hetero compound RE9 (in PDB entry 1CBQ) to REA
> (1CBS). the two hetero compounds have the same number of heavy atoms,
> with the same names.
>
> --dvd
>
> ******************************************************************
> Gerard J. Kleywegt
> [Research Fellow of the Royal Swedish Academy of Sciences]
> Dept. of Cell & Molecular Biology University of Uppsala
> Biomedical Centre Box 596
> SE-751 24 Uppsala SWEDEN
>
> http://xray.bmc.uu.se/gerard/ mailto:gerard@xray.bmc.uu.se
> ******************************************************************
> The opinions in this message are fictional. Any similarity
> to actual opinions, living or dead, is purely coincidental.
> ******************************************************************

--
=========================================================================
Mario A. Bianchet Ph.D.
bianchet@jhu.edu
Instructor
http://juliet.med.jhmi.edu/~bianchet
Dept. of Biophysics and Biophysical
Address:725 N.Wolfe st, WBSB 614
Chemistry, Johns Hopkins University
Baltimore, Maryland, 21205, USA
School of Medicine

Assistant Professor, (adjunct app.)
Phones: +1 (410) 931-2143(home)
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CCP4bb <-- 2007 <-- October 2007 <-- 03 October 2007

Previous message:
Subject: Postdoctoral Positions at the Burnham Institute
From: "Jin, Rongsheng" rsjin {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2007-10-02

Next message:
Subject: Re: Morphing with mutations
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2007-10-03