Re: [ccp4bb] Problems with CCP4MG

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: electron density peak volume
From: Andrew Pannifer a {- dot -} pannifer {- at -} BEATSON {- dot -} GLA {- dot -} AC {- dot -} UK
Date: 2012-07-06

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Subject: Re: electron density peak volume
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2012-07-06

Subject: Re: Problems with CCP4MG
From: Regina Kettering reginakettering {- at -} YAHOO {- dot -} COM
Date: 2012-07-06

The model is a theoretical model of Q766C3 (nepenthesin 1), link to the download below:

http://swissmodel.expasy.org/?pid=smf02&source=repository&tid=file_model&mid=7d1184184e0086123cd94070ab861eb2_1

For the virus problem, it gives me the automatic "You have downloaded a file from the internet. It could be a virus" error, but then gives me two further errors when installing and automatically quarantines the files. The program does not work because it then cannot find the two quarantined files. The computer contains two sets of virus protection software: Symantic and Windows Defender.

Thank you for the help.

Regina

________________________________
From: Stuart McNicholas
To: Regina Kettering
Cc: CCP4BB@JISCMAIL.AC.UK
Sent: Friday, July 6, 2012 3:33 AM
Subject: Re: [ccp4bb] Problems with CCP4MG

Dear Regina,

On 5 Jul 2012, at 17:51, Regina Kettering wrote:

Dear All;
>
>
>I have two problems with the visualization program that I am hoping people can help me with:
>1) I downloaded a model from the Swiss-Model repository that I have been trying to open on CCP4MG version 2.4.2. I have it saved as a .pdb file but when it loads, CCP4MG hangs and appears to convert the file into a .pdb.html file. I can remove any spurious lines in the file, resave, reload, to no avail. I can open the .pdb file without problems in Coot and Pymol.
>

Could you send me a (a link to) the pdb file so that I can llnk to see what is wrong. I am sure this must be something quite simple to fix.

2) I decided to try opening on a Windows machine (don't judge), so downloaded CCP4MG executable today (version 2.5.2). When installing, I received two messages indicating that the executable is a virus. Is anyone aware of this problem; am I missing a program necessary to open the files?
>

This is simply your anti-virus really thinking that CCP4MG is a virus. It is not. You need to tell your anti-virus program that CCP4MG is not a virus. How you do that depends on which anti-virus program you have. Then you need to search the web to find out how to deal with false positives. If you know what your anti-virus program is, I might be able to help you with fixing the problem.

Best wishes,
Stuart McNicholas

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: electron density peak volume
From: Andrew Pannifer a {- dot -} pannifer {- at -} BEATSON {- dot -} GLA {- dot -} AC {- dot -} UK
Date: 2012-07-06

Next message:
Subject: Re: electron density peak volume
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2012-07-06