Re: [ccp4bb] RMSD

Protein crystallography Programs for crystallography X-ray detectors
Basic tutorials:
Protein Peptide

CCP4bb navigation

CCP4bb <-- 2007 <-- March 2007 <-- 19 March 2007

Previous message:
Subject: Re: modelling with sad/mad data
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-03-19

Next message:
Subject: Re: MTZ format conversion
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-03-19

Subject: Re: RMSD
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-03-19

Well - it reflects agreement with the dictionary - I guess there may be
differences.

Certainly there was at least one error - in THR CB-OG1 I think ..
And others may have been corrected..
Eleanor

john kryst wrote:
> Hi ccp4bb !!!
>
> Does the rmsd estimation (for eg. rmsd_bonds ) depends on the program
> we use ??
>
> Example : shifting from Refmac to CNS. There appears to be an increase
> in rmsd of bonds even without refining the structure in CNS. Is the
> estimation methods are different or am i doing something wrong !!
>
> Thanks for your valuable inputs.
>
> regards
> john

CCP4bb navigation

CCP4bb <-- 2007 <-- March 2007 <-- 19 March 2007

Previous message:
Subject: Re: modelling with sad/mad data
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-03-19

Next message:
Subject: Re: MTZ format conversion
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-03-19