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Re: [ccp4bb] refined vs 'others'
 

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CCP4bb <-- 2007 <-- November 2007 <-- 04 November 2007
Previous message:
Subject: Re: refined vs 'others'
From: Flip Hoedemaeker flip {- at -} KEYDP {- dot -} COM
Date: 2007-11-04 		Next message:
Subject: Re: protein degradation?
From: Vincent Chaptal vchaptal {- at -} MEDNET {- dot -} UCLA {- dot -} EDU
Date: 2007-11-04


Subject: Re: refined vs 'others'
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-11-04
Others: Atom not included in refinement. If at least one of the atoms
not included in X-ray grad and secder calculation they are marked as
others. These are usually
hydrogens.

Period means if torsion angle has one, two, three or four minimums.

Garib

On 4 Nov 2007, at 20:56, Flip Hoedemaeker wrote:

> Ive always assumed that "others" in case means the bonds to the
> hydrogens
> added in riding positions during refinement... This also explains
> that there
> are no torsions!
>
> Flip
>
>
>
> -----Original Message-----
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
> Bernhard Rupp
> Sent: Sunday, November 04, 2007 9:19 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: [ccp4bb] refined vs 'others'
>
> Dear All -
>
> wondering about what exactly does
>
> REMARK 3 BOND LENGTHS REFINED (A): 2377 ; 0.022 ; 0.021
>
> REMARK 3 BOND LENGTHS OTHERS (A): 2071 ; 0.003 ; 0.020
>
>
> 'others' imply and what does that tell me?
>
> and where can I find the exact meaning of 'period' in
>
> REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 6.466 ; 5.000
>
> REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 59 ;40.002 ;25.932
>
> REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 292 ;11.833 ;15.000
>
> REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 2 ;15.038 ;15.000
>
> why are there no 'others' torsions?
>
> Thx, br
>
> -----------------------------------------------------------------
> Bernhard Rupp
> http://www.ruppweb.org/
> -----------------------------------------------------------------
> A good plan today is better
> than a perfect plan tomorrow.
> -----------------------------------------------------------------
>

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CCP4bb <-- 2007 <-- November 2007 <-- 04 November 2007
Previous message:
Subject: Re: refined vs 'others'
From: Flip Hoedemaeker flip {- at -} KEYDP {- dot -} COM
Date: 2007-11-04 		Next message:
Subject: Re: protein degradation?
From: Vincent Chaptal vchaptal {- at -} MEDNET {- dot -} UCLA {- dot -} EDU
Date: 2007-11-04


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