Re: [ccp4bb] TLSANAL

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: TLSANAL
From: Jim Naismith naismith {- at -} ST-ANDREWS {- dot -} AC {- dot -} UK
Date: 2007-11-15

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Subject: Re: TLSANAL
From: Martyn Winn m {- dot -} d {- dot -} winn {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-11-15

Subject: Re: TLSANAL
From: Flip Hoedemaeker flip {- at -} KEYDP {- dot -} COM
Date: 2007-11-15

Hi Jim,

I find the graphical representation of the TLS motion determination site
(http://skuld.bmsc.washington.edu/~tlsmd/) very helpful. You only have to
feed it the final PDB to set up an automated TLS analysis. Im not sure if
you can submit your own TLS file...

Flip

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Jim
Naismith
Sent: Thursday, November 15, 2007 9:18 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] TLSANAL

I have a multidomain multimeric protein. I would be interested to see if the
TLS parameters correlate with some functional data.
TLSANAL tanks with overlap error (no overlap that I am aware of). I fed it
tls file and final pdb.

Does anyone know any other way to interpret TLS parameters? (preferably in a
way that can be displayed in CCP4MG or pymol)

(I know about pymmlib, at the moment I am strill struggling with a new Linux
cluster and cant yet install it properly.)

best
Jim

James H. Naismith FRSE
Research mailto:naismith@st-and.ac.uk
Professor of Chemical Biology
Teaching mailto:jhn@st-and.ac.uk
Centre for Biomolecular Sciences
Office: 1334-463792
The North Haugh
Fax : 1334-467229
The University
Lab : 1334-467245
St. Andrews
In UK add 0 to start of number
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http://www.st-and.ac.uk/~strucbio

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: TLSANAL
From: Jim Naismith naismith {- at -} ST-ANDREWS {- dot -} AC {- dot -} UK
Date: 2007-11-15

Next message:
Subject: Re: TLSANAL
From: Martyn Winn m {- dot -} d {- dot -} winn {- at -} DL {- dot -} AC {- dot -} UK
Date: 2007-11-15