Re: [ccp4bb] SORTMTZ error status = 256

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Poinless and space group P 4 3 2
From: Airlie McCoy ajm201 {- at -} CAM {- dot -} AC {- dot -} UK
Date: 2007-11-19

Next message:
Subject: Re: Poinless and space group P 4 3 2
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-11-19

Subject: Re: SORTMTZ error status = 256
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2007-11-19

Hello Eleanor
I was using the ccp4i gui to run scala when I got the "SORTMTZ detected
error on obtaining record from sort procedure in return phase, status =
256" .
The error vanished when I upgraded from ccp4 6.0 to 6.0.2

In any case the old com file for sortmtz is pasted below. It seems quite
normal .
Thanks for your help
Hari

sortmtz HKLIN "/home/hari/cy30_2/cy30_2_p3.mtz" HKLOUT
"/home/hari/cy30_2/cy30_2_p3_sorted.mtz"

ASCEND
H K L M/ISYM BATCH
scala HKLIN "/home/hari/cy30_2/cy30_2_p3_sorted.mtz" HKLOUT
"/tmp/hari/cy30_2_charlie_8_2_mtz.tmp" SCALES
"/home/hari/cy30_2/cy30_2_charlie_8.scala" ROGUES
"/home/hari/cy30_2/cy30_2_charlie_8_rogues.log" NORMPLOT
"/home/hari/cy30_2/cy30_2_charlie_8_normplot.xmgr" ANOMPLOT
"/home/hari/cy30_2/cy30_2_charlie_8_anomplot.xmgr" PLOT
"/home/hari/cy30_2/cy30_2_charlie_8_surface_plot.plt" CORRELPLOT
"/home/hari/cy30_2/cy30_2_charlie_8_correlplot.xmgr"

title P3 proc on charlie scaling
name project cy crystal cy30_2 dataset cy30_2
exclude EMAX -
10.0
partials -
check -
test 0.95 1.05 -
nogap
intensities PROFILE -
PARTIALS
final PARTIALS
scales -
rotation SPACING 5 -
secondary 6 -
bfactor ON -
BROTATION SPACING 20
UNFIX V
FIX A0
UNFIX A1
initial MEAN
tie surface 0.001
tie bfactor 0.3
cycles 10 converge 0.3 reject 2
output AVERAGE
print brief nooverlap
RSIZE 80

On Nov 13, 2007 4:28 AM, Eleanor Dodson wrote:

> Can you attach the input file to sortmtz - the error is cryptic! I
> suspect the input file is corrupted somehow, but it needs testing.
>
> eleanor
>
>
> hari jayaram wrote:
> > Hi ,
> > I have a low resolution dataset at 3.2 to 3.5 $B"r(B resolution , upon
> running
> > scala I get the following rather cryptic error
> >
> > SORTMTZ detected error on obtaining record from sort procedure in return
> > phase, status = 256
> >
> > I am slightly unsure of the spacegroup and have been trying to process
> and
> > scale
> > the mtz file from mosflm in the various possibilities.
> >
> > I get the error when I try to process this dataset with the other
> > possibilities from mosflm ( P3 and weirdly enough C222).
> > Is this telling me something about my data or is it a bug. Googling
> revealed
> > only one unanswered post right here on ccp4bb
> >
> >
> > The same set of images when processed as P1 give an rmerge of around
> 0.13 to
> > 3.2 A
> >
> >
> >
> > Thanks
> > hari Jayaram
> > postdoc, Brandeis University
> >
> > The detailed error is given below
> >
> >

Header Information For Output MTZ File
>

> >


> >  SORTMTZ detected error on obtaining record from sort procedure in
> return
> > phase, status =  256
> >
> >  SORTMTZ:  Sorting failed
> > Times: User:       5.5s System:    0.3s Elapsed:     0:11
> >

> >
> >
> >
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Poinless and space group P 4 3 2
From: Airlie McCoy ajm201 {- at -} CAM {- dot -} AC {- dot -} UK
Date: 2007-11-19

Next message:
Subject: Re: Poinless and space group P 4 3 2
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-11-19

Re: [ccp4bb] SORTMTZ error status = 256

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Header Information For Output MTZ File
>