Re: [ccp4bb] coot-bones not showing

Protein crystallography Programs for crystallography X-ray detectors
Basic tutorials:
Protein Peptide

CCP4bb navigation

CCP4bb <-- 2007 <-- December 2007 <-- 02 December 2007

Previous message:
Subject: Re: Rotation search using the Patterson in a non-spherical neighbourhood of the origin
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2007-12-02

Next message:
Subject: Re: Rotation search using the Patterson in a non-spherical neighbourhood of the origin
From: Ian Tickle I {- dot -} Tickle {- at -} ASTEX-THERAPEUTICS {- dot -} COM
Date: 2007-12-02

Subject: Re: coot-bones not showing
From: Bernhard Rupp bernhardrupp {- at -} SBCGLOBAL {- dot -} NET
Date: 2007-12-02

Yes, editing FOG as suggested by Ethan works.
BR
-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Ethan
A Merritt
Sent: Saturday, December 01, 2007 4:36 PM
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] coot-bones not showing

On Saturday 01 December 2007 16:22, Paul Emsley wrote:
> I'll add in bones and graphics objects to the spec for 0.5.

Raster3D does handle labels, although the implementation is clumsy.
It will soon have proper label support, though.

> > 2) The depth cueing of the map grid is too large, i.e. too much
> > foging. Can that be reset?
>
> I think that it can be done post-hoc in the raster3d file header.
> Perhaps by increasing the ambient light?

I haven't actually looked to see what Coot outputs, but logically it would
emit a FOG command to Raster3D. So yes, you could edit that command
afterwards.

--
Ethan A Merritt
Biomolecular Structure Center
University of Washington, Seattle 98195-7742

CCP4bb navigation

CCP4bb <-- 2007 <-- December 2007 <-- 02 December 2007