[ccp4bb] ciftr troubles - now with logfile

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: ciftr troubles
From: Jan Abendroth jan {- dot -} abendroth {- at -} GMAIL {- dot -} COM
Date: 2007-12-03

Next message:
Subject: Re: FW: protein induced precipitation of proteins?
From: Jerry McCully for-crystallizaiton {- at -} HOTMAIL {- dot -} COM
Date: 2007-12-03

Subject: ciftr troubles - now with logfile
From: Jan Abendroth jan {- dot -} abendroth {- at -} GMAIL {- dot -} COM
Date: 2007-12-03

... meant to include this logfile in my previous post:
-Jan

/sw/xtal/ciftr/ciftr-v2.053-prod-bin-darwin/bin/CIFTr -i output.cif
Translating a mmCIF file [1] output.cif to PDB file output.cif.pdb
Warning skipping item _computing.pdbx_density_modification is NOT in
dictionary.
Warning skipping item _data_extraction.software is NOT in dictionary.
Warning skipping item _data_extraction.extraction_date is NOT in dictionary.
Warning skipping item _data_extraction.version is NOT in dictionary.
Warning skipping item _data_extraction.release_date is NOT in dictionary.
Warning skipping item _data_extraction.location is NOT in dictionary.
Warning skipping item _diffrn_detector.ndb_collection_date is NOT in
dictionary.
Warning skipping item _diffrn_radiation.rcsb_diffrn_protocol is NOT in
dictionary.
Warning skipping item _diffrn_source.rcsb_wavelength_list is NOT in
dictionary.
Warning skipping item _exptl_crystal.pdbx_mosaicity is NOT in dictionary.
Warning skipping item _reflns.pdbx_number_measured_all is NOT in dictionary.
Warning skipping item _reflns.pdbx_rmeas_mean is NOT in dictionary.
Warning skipping item _reflns.pdbx_resolution_low_scale is NOT in
dictionary.
Warning skipping item _reflns.pdbx_resolution_high_scale is NOT in
dictionary.
Warning skipping item _reflns.pdbx_average_i_obs is NOT in dictionary.
Warning skipping item _reflns.pdbx_average_sigmai_obs is NOT in dictionary.
Warning skipping item _reflns_shell.pdbx_rejects is NOT in dictionary.
Warning skipping item _reflns_shell.pdbx_rmeas_mean is NOT in dictionary.
Warning skipping item _reflns_shell.pdbx_meani_over_sd is NOT in dictionary.
Warning skipping item _reflns_shell.pdbx_number_centric is NOT in
dictionary.
Warning skipping item _reflns_shell.pdbx_number_anomalous is NOT in
dictionary.
Warning skipping item _reflns_shell.pdbx_rmerge_i_anomalous is NOT in
dictionary.
Warning skipping item _reflns_shell.pdbx_meani_over_sigi_anomalous is NOT in
dictionary.
Warning skipping item _reflns_shell.pdbx_pcv_mean is NOT in dictionary.
Warning skipping item _struct.ndb_details is NOT in dictionary.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: ciftr troubles
From: Jan Abendroth jan {- dot -} abendroth {- at -} GMAIL {- dot -} COM
Date: 2007-12-03

Next message:
Subject: Re: FW: protein induced precipitation of proteins?
From: Jerry McCully for-crystallizaiton {- at -} HOTMAIL {- dot -} COM
Date: 2007-12-03