[ccp4bb] How to make a structure-based multiple sequence alignment on DALI server?

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: skin on a drop
From: james whisstock james {- dot -} whisstock {- at -} MED {- dot -} MONASH {- dot -} EDU {- dot -} AU
Date: 2007-12-04

Next message:
Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-12-04

Subject: How to make a structure-based multiple sequence alignment on DALI server?
From: david wu david {- dot -} dlwu {- at -} GMAIL {- dot -} COM
Date: 2007-12-04

Hi all£¬

I want to produce structure-based multiple sequence alignment of my protein with five of its homologs on DALI server. However, when I tried the "Database Search Form", only one homolog was picked up from PDB. If I align my protein with each homolog by the "DaliLite Pairwise comparison", how can I combine them together?

Thanks in advance.

Best regards,

Sincerely,

Dalei Wu
Drug Discovery and Design Center
Shanghai Institute of Materia Medica
Shanghai Institutes for Biological Sciences
Chinese Academy of Sciences
555 Zu Chongzhi Road, Shanghai, 201203, China
david.dlwu@gmail.com
2007-12-05

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: skin on a drop
From: james whisstock james {- dot -} whisstock {- at -} MED {- dot -} MONASH {- dot -} EDU {- dot -} AU
Date: 2007-12-04

Next message:
Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-12-04