Re: [ccp4bb] How to make a structure-based multiple sequence alignment on DALI server?

Protein crystallography Programs for crystallography X-ray detectors
Basic tutorials:
Protein Peptide

CCP4bb navigation

CCP4bb <-- 2007 <-- December 2007 <-- 05 December 2007

Previous message:
Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-12-04

Next message:
Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: Klaus Futterer k {- dot -} futterer {- at -} BHAM {- dot -} AC {- dot -} UK
Date: 2007-12-05

Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: David Goldstone david {- dot -} goldstone {- at -} NIMR {- dot -} MRC {- dot -} AC {- dot -} UK
Date: 2007-12-05

Hi,

I would suggest the indonesia program... easy to use and very flexible.

http://xray.bmc.uu.se/dennis/

Cheers

Dave

david wu wrote:
> Hi all£¬
>
> I want to produce structure-based multiple sequence alignment of my protein with five of its homologs on DALI server. However, when I tried the "Database Search Form", only one homolog was picked up from PDB. If I align my protein with each homolog by the "DaliLite Pairwise comparison", how can I combine them together?
>
> Thanks in advance.
>
>
> Best regards,
>
> Sincerely,
>
> Dalei Wu
> Drug Discovery and Design Center
> Shanghai Institute of Materia Medica
> Shanghai Institutes for Biological Sciences
> Chinese Academy of Sciences
> 555 Zu Chongzhi Road, Shanghai, 201203, China
> david.dlwu@gmail.com
> 2007-12-05

CCP4bb navigation

CCP4bb <-- 2007 <-- December 2007 <-- 05 December 2007

Previous message:
Subject: Re: How to make a structure-based multiple sequence alignment on DALI server?
From: James Irving irving {- dot -} james {- at -} GMAIL {- dot -} COM
Date: 2007-12-04