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Re: [ccp4bb] Protein DNA complex refinement
 

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CCP4bb <-- 2008 <-- January 2008 <-- 03 January 2008
Previous message:
Subject: Protein DNA complex refinement
From: Daouda TRAORE daouda {- dot -} traore {- at -} IBS {- dot -} FR
Date: 2008-01-03 		Next message:
Subject: Re: Protein DNA complex refinement
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-01-03


Subject: Re: Protein DNA complex refinement
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-03
If you take new dictionary with new refmac it may solve this and some
other naming problems.

Try from the website:

www.ysbl.york.ac.uk/YSBLPrograms/index.jsp

Garib

On 3 Jan 2008, at 16:53, Daouda TRAORE wrote:

> Hi all,
> I'm trying to refine a protein DNA complex using Refmac.
> Unfortunately the job fails because of the definition of nucleosides :
> In the pdb file I use for molecular replacement (and it's the same
> for all protein-DNA complex I found in the PDB) nucleosides are
> labelled DG, DT, DA , DC. In the monomer libraries for Refmac these
> are labelled GD, TD, AD, CD.
> The jobs fails also if I replace the "DG, DT, DA , DC" by "GD, TD,
> AD, CD" in the coordinate file prior to refinement.
> Could someone help me.
>
> --
> --------------------------------------------------------
> Daouda A.K. TRAORE, PhD Student
>
> Laboratoire de Cristallographie et Cristallogenèse des Protéines
> Institut de Biologie Structurale de Grenoble
> 41 rue Jules Horowitz
> 38027 Grenoble Cedex 1 - France
> Phone: @IBS: +33 4 38 78 95 96 @ESRF/FIP: +33 4 76 88 27 89
> Fax: +33 4 38 78 51 22
>
> ************************
>
> Laboratoire Chimie et Biologie des Metaux
> CEA Grenoble iRTSV / LCBM / PMB
> 17 Avenue des Martyrs
> 38054 Grenoble Cedex 9 - France
> Phone : +33 4 38 78 38 75
> Fax : +33 4 38 78 34 62
>
> E-mail: daouda.traore@ibs.fr
> --------------------------------------------------------
>
>

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CCP4bb <-- 2008 <-- January 2008 <-- 03 January 2008
Previous message:
Subject: Protein DNA complex refinement
From: Daouda TRAORE daouda {- dot -} traore {- at -} IBS {- dot -} FR
Date: 2008-01-03 		Next message:
Subject: Re: Protein DNA complex refinement
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-01-03


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