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Re: [ccp4bb] Any programs other than GRASP have a surface scribing function?
 

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CCP4bb <-- 2008 <-- January 2008 <-- 08 January 2008
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Subject: Re: Any programs other than GRASP have a surface scribing function?
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-01-08
Just to add to that, on OS X, if you install the apbs and pymol packages via fink, everything will be set up for you. I think this is also true of at least Ubuntu and other debian linux varieties. As far as I am aware, the plugin is not compatible with the non-X-windows PyMOL on OS X.

On Tue, 8 Jan 2008 20:30:50 +0000
hua jing wrote:

You can use APBS plugin in PyMol. See installation instruction at http://www-personal.umich.edu/~mlerner/PyMOL/ or http://www.pymolwiki.org/index.php/APBS

Holly
________________________________
> Date: Tue, 8 Jan 2008 14:01:02 -0600
> From: Thompson.James@MAYO.EDU
> Subject: [ccp4bb] Any programs other than GRASP have a surface scribing function?
> To: CCP4BB@JISCMAIL.AC.UK
>
>
> Dear CCP4'ers,
>
> Any Windows/Linux/OS X programs have a surface scribing function similar to that found in GRASP, to quickly draw the border of a surface selection (or subset) and calculate or display local features of the molecular surface? I have no access to SGIs now. I have a memory of similar function elsewhere but am not finding the ability within GRASP2, DINO, CHIMERA, etc. Perhaps I'm thinking of Setor which was also IRIX, and perhaps this memory is suspect... Other selection methods for a molecular surface require more of my time to define the subset.
>
> Many thanks,
>
> Jim
>
> James R. Thompson
>
> Assistant Professor of Biophysics
>
> Mayo Clinic College of Medicine
>
> Department of Physiology and Biomedical Engineering
>
> Mayo Proteomics Research Center
>
> Office 507-538-3891
>
> Fax 507-538-3954
>
> E-mail thompson.james@mayo.edu
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