Re: [ccp4bb] Any programs other than GRASP have a surface scribing function?

Protein crystallography Programs for crystallography X-ray detectors
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CCP4bb <-- 2008 <-- January 2008 <-- 08 January 2008

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From: Bernhard Rupp bernhardrupp {- at -} SBCGLOBAL {- dot -} NET
Date: 2008-01-08

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Subject: Re: Any programs other than GRASP have a surface scribing function?
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-01-08

> As far as I am aware, the plugin is not
> compatible with the non-X-windows PyMOL on OS X.

Actually, it is -- the trick is to rename the "MacPyMOL.app" executable
"PyMOLX11Hybrid.app". However, people should note that current MacPyMOL
builds are commercial products (not FREE) avialable from DeLano
Scientific LLC.

In contrast, Open-Source PyMOL compiled under Fink is the current FREE
version of PyMOL for Mac OS X endorsed by DeLano Scientific LLC. Please
be sure to thank Jack Howarth for maintaining it!

Cheers,
Warren

> -----Original Message-----
> From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On
> Behalf Of William Scott
> Sent: Tuesday, January 08, 2008 3:30 PM
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] Any programs other than GRASP have a
> surface scribing function?
>
> Just to add to that, on OS X, if you install the apbs and
> pymol packages via fink, everything will be set up for you.
> I think this is also true of at least Ubuntu and other debian
> linux varieties. As far as I am aware, the plugin is not
> compatible with the non-X-windows PyMOL on OS X.
>
> On Tue, 8 Jan 2008 20:30:50 +0000
> hua jing wrote:
>
> You can use APBS plugin in PyMol. See installation
> instruction at http://www-personal.umich.edu/~mlerner/PyMOL/
> or http://www.pymolwiki.org/index.php/APBS
>
> Holly
> ________________________________
> > Date: Tue, 8 Jan 2008 14:01:02 -0600
> > From: Thompson.James@MAYO.EDU
> > Subject: [ccp4bb] Any programs other than GRASP have a
> surface scribing function?
> > To: CCP4BB@JISCMAIL.AC.UK
> >
> >
> > Dear CCP4'ers,
> >
> > Any Windows/Linux/OS X programs have a surface
> scribing function similar to that found in GRASP, to quickly
> draw the border of a surface selection (or subset) and
> calculate or display local features of the molecular surface?
> I have no access to SGIs now. I have a memory of similar
> function elsewhere but am not finding the ability within
> GRASP2, DINO, CHIMERA, etc. Perhaps I'm thinking of Setor
> which was also IRIX, and perhaps this memory is suspect...
> Other selection methods for a molecular surface require more
> of my time to define the subset.
> >
> > Many thanks,
> >
> > Jim
> >
> > James R. Thompson
> >
> > Assistant Professor of Biophysics
> >
> > Mayo Clinic College of Medicine
> >
> > Department of Physiology and Biomedical Engineering
> >
> > Mayo Proteomics Research Center
> >
> > Office 507-538-3891
> >
> > Fax 507-538-3954
> >
> > E-mail thompson.james@mayo.edu
> _________________________________________________________________
> Watch "Cause Effect," a show about real people making a
> real difference.
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>
>
>
>

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CCP4bb <-- 2008 <-- January 2008 <-- 08 January 2008

Previous message:
Subject: Drug target crystallography and virtual discovery course, PSP Jan 21-22 2008
From: Bernhard Rupp bernhardrupp {- at -} SBCGLOBAL {- dot -} NET
Date: 2008-01-08

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Subject: Re: DNA contamination post-Talon?
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
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