Re: [ccp4bb] CCP4 for bioinformatics?

Protein crystallography Programs for crystallography X-ray detectors
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Subject: CCP4 for bioinformatics?
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2008-01-21

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Subject: Re: CCP4 for bioinformatics?
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2008-01-21

Subject: Re: CCP4 for bioinformatics?
From: Ethan Merritt merritt {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2008-01-21

On Monday 21 January 2008 15:33, Jacob Keller wrote:
> Dear Crystallographers,
>
> Does anyone know of a bioinformatics counterpart of ccp4? It seems like
> there should really be such an entity, so that folks would not have to write
> scripts, reinventing the wheel all of the time. I am trying right now to
> manipulate some sequences into various forms, and I was imagining a
> "moleman" homolog for bioinformatics (perhaps seqman....?).

BioPython
http://biopython.org/wiki/Main_Page

There is also BioPerl
http://www.bioperl.org/wiki/Main_Page
I worked with that for a while. From my limited contact with the project,
they seemed strangely uninterested in 3D structure. But for sequence-based
work it was a useful toolkit.

--
Ethan A Merritt

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CCP4bb <-- 2008 <-- January 2008 <-- 21 January 2008

Previous message:
Subject: CCP4 for bioinformatics?
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2008-01-21

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Subject: Re: CCP4 for bioinformatics?
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2008-01-21