Re: [ccp4bb] cannot read .mtz in ccp4i

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: Codon Optimized Expression
From: Partha Chakrabarti ppchak {- at -} GMAIL {- dot -} COM
Date: 2008-02-02

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Subject: Re: Codon Optimized Expression
From: Andreas_Förster docandreas {- at -} GMAIL {- dot -} COM
Date: 2008-02-02

Subject: Re: cannot read .mtz in ccp4i
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-02-02

Is it possible that you have phenix (or some old version of phenix)
installed and that the PATH variable from the CCP4i gui finds that phenix
first?

Check if ccp4_first_in_path is set to 1 in your $CCP4/include/ccp4.setup
script.

Tim

--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

GPG Key ID = A46BEE1A

On Fri, 1 Feb 2008, C.Ainsley Davis wrote:

> Hello all
>
> I've recently redone a computer system using Ubuntu Gutsy Gibbon as the OS.
> We've had success using Feisty Fawn in the past and using the ccp4i suite
> downloaded from wgscott's page (the debian files used in ubuntu). For
> whatever reason we cannot use PHASER in the ccp4i suite. The error we
> continuously get is "cannot read .mtz file" FAILURE..etc.
>
> If i use a small script file (for example phaser.sh or phaser.com) with the
> following lines
> phaser << eof
>
> MODE MR_AUTO
> HKLIN "./p3.mtz"
> LABIN F=F_1 SIGF=SIGF_1
> TITLE MR_01
> COMPOSITION PROTEIN MW 13000 NUMBER 1
> SGALTERNATIVE ALL
> TOPFILES 5
> ENSEMBLE ensemble1 &
> PDBFILE "x.pdb" &
> IDENT 40.0
> SEARCH ENSEMBLE ensemble1 &
> NUMBER 2
>
> RESOLUTION 4.0 30.0
>
>
> ROOT p3
>
> end
>
> and it works, but the ccp4i GUI cannot read it in PHASER. It works for REFMAC
> when doing refinements.
>
> what the heck!
>
> thanks all
>
> Ainsley Davis
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Codon Optimized Expression
From: Partha Chakrabarti ppchak {- at -} GMAIL {- dot -} COM
Date: 2008-02-02

Next message:
Subject: Re: Codon Optimized Expression
From: Andreas_Förster docandreas {- at -} GMAIL {- dot -} COM
Date: 2008-02-02