Re: [ccp4bb] Still cannot read .mtz + another ?

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CCP4bb <-- 2008 <-- February 2008 <-- 04 February 2008

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From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-02-04

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Subject: Re: Still cannot read .mtz + another ?
From: "C {- dot -} Ainsley Davis" mitgator {- at -} MIT {- dot -} EDU
Date: 2008-02-04

Peter and Miguel,

thanks for the help with Refmac, it appears to be working correctly!

still issues with PHASER though..

thanks a bunch!

Ainsley

P.J.Briggs wrote:
> Dear Ainsley
>
> I'm not sure which file you took from Garib's page, however the CCP4i
> "install" options (under the "System Administration" menu) are only for
> installing new interfaces and not for updating the programs themselves.
>
> I just took a look at the files on Garib's page, and downloaded the file
> linked as "refmac 5.4 for linux", which arrives on your system as
> "refmac5.4_linintel.tar.gz". Unpacking this I get three files:
>
> refmac_linintel
> makecif_linintel
> libcheck_linintel
>
> These are updated executables for the refmac5, makecif and libcheck
> programs that should be in the "bin" directory of your CCP4 distribution
> (do "cd $CBIN" to get there) - you should move the current executables
> out of the way, and then copy and rename the new files into the bin
> directory.
>
> For the new dictionary, I would suggest downloading the file and
> unpacking it somewhere like the lib/data/ subdirectory of your CCP4
> distribution. This should create something like
> /your/path/ccp4-6.0.2/lib/data/dic
>
> You can then change the environment variable "CLIBD_MON" to point to
> /your/path/ccp4-6.0.2/lib/data/dic/, either on the command line or in
> ccp4.setup (probably better to do the latter).
>
> I'm pretty sure that this should work - sorry if it sounds complicated.
> And yes it would probably be useful if Garib did indeed include some
> information about updating on the actual page - but we don't have any
> control over that.
>
> Hope that this helps, best wishes
>
> Peter Briggs
> CCP4
>
> C.Ainsley Davis wrote:
>
>> Hey all I have checked everything that was mentioned here.
>>
>> I dont have PHENIX installed ( I am using the current version from
>> http://diablo/ucsc.edu/~wgscott/debian/deb/ccp4/)
>>
>> I checked the setup file and its set to 1
>>
>> Any other ideas?
>>
>>
>> Next question
>>
>> I would like to install the newest version of REFMAC. I downloaded the
>> file from Garib's page) I try to use the ccp4 GUI to install the file,
>> but it doesnt like it. It says something about it being unable to read
>> the contents. If I gunzip then tar the file i get 3 files which I am
>> not sure what to do with. There is also a new library file Garib
>> recommends downloading, but in any case I cannot install the 5.4 version
>> of REFMAC and cannot find any documentation online on how to install it!
>>
>> Thanks again CCP4 BB!
>>
>
>

CCP4bb navigation

CCP4bb <-- 2008 <-- February 2008 <-- 04 February 2008

Previous message:
Subject: Re: 3D Glasses - Vuzix HMD by eDimensional
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-02-04

Next message:
Subject: Re: an over refined structure
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-02-04