Re: [ccp4bb] phaser in ccp46.0.2

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CCP4bb <-- 2007 <-- March 2007 <-- 27 March 2007

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Subject: phaser in ccp46.0.2
From: yang li robertcatrukie {- at -} GMAIL {- dot -} COM
Date: 2007-03-26

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From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-03-27

Subject: Re: phaser in ccp46.0.2
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2007-03-27

Hi,

You are almost certainly not using phaser that came with ccp4, but some
other version, e.g. phenix. From the window you start ccp4i from, type
'which phaser'. It should say '/your/path/to/ccp4-6.0.2/bin/phaser', but
it will say something different in your case (e.g.
'/your/path/to/phenix/bin/phaser'). Make sure your path variable has CBIN
before the path of the other phenix-path, or rename the phenix-version if
you do not use it.

Probably the best way would be to start up ccp4i from a script that
sources the ccp4i environment first and then starts ccp4i - that way your
environment settings do not affect the other programs (would that be a
suggestion to the ccp4-developers?)
so create a script saying something like
#!/bin/sh
source /your/path/to/ccp4-6.0.2/include/ccp4.setup
exec ccp4i

and make sure ccp4.setup puts CBIN first in the PATH variable.

Cheers, Tim

--
Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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On Tue, 27 Mar 2007, yang li wrote:

> Hi,
> Anyone has used phser in ccp46.0.2 which is automatically installed with
> ccp4? In previous ccp4 edition
> I installed phaser seperately and it worked well, but now it seems has some
> problems, it cannot read the
> input mtz file, I tried several data, all gave the same error information
> like below:
> *************************************************************************************
> *** Phaser Module: READ DATA FROM MTZ
> FILE 2.0 ***
> *************************************************************************************
>
>
>
> -----------------------------------------------
> FILE OPENING ERROR: "/root/work/1she/1she.mtz"
> -----------------------------------------------
>
>
> --------------------
> EXIT STATUS: FAILURE
> --------------------
>
> I donnot think all these data are bad, and these data can be read in other
> mr programs.
> I wonder if I should install phaser again? The phaser install package for
> CCP4-5.0 still can be used in this edition?
> Thanks!
>

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CCP4bb <-- 2007 <-- March 2007 <-- 27 March 2007

Previous message:
Subject: phaser in ccp46.0.2
From: yang li robertcatrukie {- at -} GMAIL {- dot -} COM
Date: 2007-03-26

Next message:
Subject: Re: Highest shell standards
From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-03-27