Re: [ccp4bb] motif search

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: motif search
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2008-04-06

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From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-04-07

Subject: Re: motif search
From: Charlie Bond Charles {- dot -} Bond {- at -} UWA {- dot -} EDU {- dot -} AU
Date: 2008-04-06

I'm pretty sure that this is exactly what you want. You can search for
sequence, specific type of motif, phi/psi angles all in one search.

http://www.ebi.ac.uk/msd-srv/msdmotif/

The interface has changed since I last used it properly, but it found a
set of beta turns with the same sequence that I was interested in.

Cheers,
Charlie

Sean Johnson wrote:
> Is there a way to search the PDB for both sequence and secondary
> structure characteristics? I am trying to identify examples of a short
> (4 aa) sequence located in loop or other non-helical/sheet regions.
>
> Thanks,
> Sean Johnson
>

--
Charlie Bond
Professorial Fellow
University of Western Australia
School of Biomedical, Biomolecular and Chemical Sciences
M310
35 Stirling Highway
Crawley WA 6009
Australia
Charles.Bond@uwa.edu.au
+61 8 6488 4406

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: motif search
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2008-04-06