Re: [ccp4bb] upgrade coot via fink on OS X

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: heavy atom tutorial--thanks, and a summary
From: Patrick Loll ploll {- at -} DREXELMED {- dot -} EDU
Date: 2008-04-14

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Subject: Re: upgrade coot via fink on OS X
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-04-14

Subject: Re: upgrade coot via fink on OS X
From: Andreas_Förster docandreas {- at -} GMAIL {- dot -} COM
Date: 2008-04-14

Hey Klaus,

after I installed coot 0.5 via fink for the first time, I encountered
stalling during startup as well. However, this resolved itself within a
minute. Startup resumed, and the next time around, everything was back
to normal. Were you patient enough during startup?

Andreas

Klaus Futterer wrote:
> I had previously installed coot 0.3.2 using fink on OS X on MacBook Pro
> (under Tiger).
>
> Trying to update coot using fink proved more difficult.
>
> Initially I tried
> sudo apt-get install coot
>
> Coot would install but would not start due to a library version mismatch.
> Then it got messy. I followed instructions given on Bill Scott's
> 'Install crystallography using fink'
> page:
>
> fink scanpackages; fink index
> sudo apt-get update
> sudo apt-get dist-upgrade
>
> The last command stalled - during imagamagick update.
>
> Then I just tried again:
> sudo apt-get install coot
>
> Now coot would start, but stall saying:
> Reading coordinate file: /sw/share/coot/standard-residues.pdb
> PDB file /sw/share/coot/standard-residues.pdb has been read.
> Spacegroup: P 1
> Cell: 40.631 109.18 93.243 90 90 90
> art_render_invoke: no image source given
>
> Can anyone suggest to properly update fink and coot?
>
> Thanks in advance,
>
> Klaus
>
>
>
> ---------------------------------------------------------------------
>
> Klaus Fütterer, Ph.D.
>
> School of Biosciences P: +44-(0)-121-414 5895
> University of Birmingham F: +44-(0)-121-414 5925
> Edgbaston E: k.futterer@bham.ac.uk
> Birmingham, B15 2TT, UK W: www.biochemistry.bham.ac.uk/klaus/
> ---------------------------------------------------------------------
>

--
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: heavy atom tutorial--thanks, and a summary
From: Patrick Loll ploll {- at -} DREXELMED {- dot -} EDU
Date: 2008-04-14

Next message:
Subject: Re: upgrade coot via fink on OS X
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-04-14