Re: [ccp4bb] Scala summary and log file- sometimes shortened

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Diana Tomchick Diana {- dot -} Tomchick {- at -} UTSOUTHWESTERN {- dot -} EDU
Date: 2008-04-24

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Date: 2008-04-24

Subject: Re: Scala summary and log file- sometimes shortened
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2008-04-24

Hello everyone,
It seems that the reason I get "short summaries" in scala is because the
"Show Summary button" is affected by a possible intermitently appearing
change in scala log file formatting.

When I looked for the text "Summary" in the log file I did find the entire
table -intact.

SO just for completeness - here is what the "Show summary" gave . And below
this I have the intact summary in the log file. It seems like ccp4i "Show
summary" button for scala log file viewing does not include the entire table
in the window everytime.

================================================================================

Summary data for Project: cy Crystal: P10_2 Dataset: P10_2

Overall InnerShell OuterShell

Low resolution limit 102.06 102.06 2.11
High resolution limit 2.00 6.34 2.00

Rmerge 0.252 0.112 5.247
Rmeas (within I+/I-) 0.269 0.118 6.982
Scala: ** Normal termination **
Times: User: 403.8s System: 7.8s Elapsed: 6:52

###############################################################

INTACT summary:
When I do Full log file view : I get the entire summary

================================================================================

Summary data for Project: cy Crystal: P10_2 Dataset: P10_2

Overall InnerShell OuterShell

Low resolution limit 102.06 102.06 2.11
High resolution limit 2.00 6.34 2.00

Rmerge 0.252 0.112 5.247
Rmeas (within I+/I-) 0.269 0.118 6.982
Scala: ** Normal termination **
Times: User: 403.8s System: 7.8s Elapsed: 6:52

Rmeas (all I+ & I-) 0.269 0.118 6.982
Rpim (within I+/I-) 0.091 0.036 4.552
Rpim (all I+ & I-) 0.091 0.036 4.552
Fractional partial bias -0.113 -0.122 -1.163
Total number of observations 1458009 111004 8307
Total number unique 212719 9864 4327
Mean((I)/sd(I)) 6.4 16.6 0.3
Completeness 67.9 99.6 9.4
Multiplicity 6.9 11.3 1.9

================================================================================

###############################################################

User: hari Run date: 22/ 4/2008 Run time: 16:39:47
On Tue, Apr 22, 2008 at 4:14 PM, hari jayaram wrote:

> For some reason scala does not output the same log file for me everytime. I
> got used to looking at the summary for my scala run, using the Show summary
> button in ccp4i after picking view log file.
> In most cases I get a detailed summary. For this particular dataset ,
> despite not changing any parameters in the GUI I get a very shortened
> summary.
> Is it that I clicked some button by mistake, that shortens the log-summary.
>
> I am using the latest version of ccp4 6.2.2 and fink installed ccp4 on OSX
> Leopard.
> I am reproducing the short and long summary here.
>
> Thanks for your help
> Hari Jayaram
>
>
> BAD Case:
>
> Summary data for Project: cy Crystal: P10_2 Dataset: P10_2
>
> Overall InnerShell OuterShell
>
> Low resolution limit 102.06 102.06 2.11
> High resolution limit 2.00 6.34 2.00
>
> Rmerge 0.252 0.112 5.247
> Rmeas (within I+/I-) 0.269 0.118 6.982
> Scala: ** Normal termination **
> Times: User: 404.5s System: 8.0s Elapsed: 6:53
>
>
>
> GOOD case:
>
> Summary data for Project: cy Crystal: p10_1 Dataset: p10_1
>
> Overall InnerShell OuterShell
>
> Low resolution limit 102.60 102.60 2.12
> High resolution limit 2.01 6.35 2.01
>
> Rmerge 0.164 0.053 3.283
> Rmeas (within I+/I-) 0.183 0.058 4.363
> Rmeas (all I+ & I-) 0.183 0.058 4.363
> Rpim (within I+/I-) 0.080 0.021 2.835
> Rpim (all I+ & I-) 0.080 0.021 2.835
> Fractional partial bias -0.022 -0.018 -0.072
> Total number of observations 835420 73666 4479
> Total number unique 196397 9701 3022
> Mean((I)/sd(I)) 2.2 4.2 0.2
> Completeness 64.3 99.8 6.9
> Multiplicity 4.3 7.6 1.5
>
>
>
> ================================================================================
>
>
>
>
>
>
>
>
>
>
>
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Question about Phoenix crystallization robot
From: Diana Tomchick Diana {- dot -} Tomchick {- at -} UTSOUTHWESTERN {- dot -} EDU
Date: 2008-04-24

Next message:
Subject: Daily Digest Version of CCP4BB
From: hua jing jing_hua {- at -} HOTMAIL {- dot -} COM
Date: 2008-04-24