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Re: [ccp4bb] [COOT] coot install on redhat |
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CCP4bb navigationCCP4bb <-- 2008 <-- April 2008 <-- 30 April 2008Subject: Re: [COOT] coot install on redhat From: Kay Diederichs Kay {- dot -} Diederichs {- at -} UNI-KONSTANZ {- dot -} DE Date: 2008-04-30 why don't you just install the latest binary distribution? That's much less hassle ... just go to http://www.ysbl.york.ac.uk/~emsley/software/binaries/nightlies/pre-release/ and grab e.g. coot-0.5-pre-1-revision-1003-binary-Linux-i386-fedora-5.tar.gz (Fedora 6 corresponds to RHEL5, thus Fedora 5 binaries are OK) Then un-tar it under /usr/local/src, and establish a symlink (ln -s) between /usr/local/bin/coot and the bin/coot of the freshly unpacked distribution. If you then run coot, and the loader complains that a certain library is missing, just ask yum whatprovides and install the library, again using yum. HTH, Kay Heidi Schubert schrieb: > Hi All, > I'm not a systems administrator ? I just play one at work. Can someone > help me over these hurdles installing the newest version of coot. > > Coot requires the following: > 1) C++ compiler ? okay got that > 2) gtk+(1.2) ?requires: > a) at least Glib 2.12 ? I think the problem is here, I > successfully installed 2.16.3 but..... > glib required newer pgk-config ? okay got that > now glib appears to install okay, puts a directory in > /usr/local/lib > b)Pango 1.13 ? okay got that > c)ATK 1.9 ? problems starts here. > During ./configure it gives the following: > > checking pkg-config is at least version 0.16... yes > checking for GLIB - version >= 2.0.0... > *** 'pkg-config --modversion glib-2.0' returned 2.16.3, but GLIB (2.4.7) > *** was found! If pkg-config was correct, then it is best > *** to remove the old version of GLib. You may also be able to fix the error > *** by modifying your LD_LIBRARY_PATH enviroment variable, or by editing > *** /etc/ld.so.conf. Make sure you have run ldconfig if that is > *** required on your system. > *** If pkg-config was wrong, set the environment variable PKG_CONFIG_PATH > *** to point to the correct configuration files > no configure: error: > *** GLIB 2.0.0 or better is required. The latest version of > *** GLIB is always available from ftp://ftp.gtk.org/. If GLIB is installed > *** but not in the same location as pkg-config add the location of the file > *** glib-2.0.pc to the environment variable PKG_CONFIG_PATH. > > 1)I ran ldconfig but this didn't do anything. I have no idea how one > would edit the ld.so.conf file. > 2) > LD_LIBRARY_PATH=/usr/local/Linux-bubbles/lib:/home/local/LINUX//ccp4-6.0.2/lib:/ > usr/local/Linux-bubbles/lib:/home/local/LINUX//ccp4-6.0.2/lib:/home/local/LINUX/ > /ccp4-6.0.2/extralib:/home/local/LINUX//ccp4-6.0.2/extralib > > ?extralib doesn't exist anyway and /ccp4-6.0.2/lib doesn't have a glib > file. There is a glib directory in the /linux-bubbles/lib but it says > version 1.2.10 not 2.4.7 > > 3)I'm using REDHAT 5. I'm sitting at a desktop box but installing > everything into /usr/local on our server. > > Where do I look for this old version of glib and will it be okay to > delete it? I'm worried I'm running into versions that are loaded on the > desktop and not on the server, but I can't find them. > > Sorry I'm so linux library illterate > Heidi > -- Kay Diederichs http://strucbio.biologie.uni-konstanz.de email: Kay.Diederichs@uni-konstanz.de Tel +49 7531 88 4049 Fax 3183 Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz CCP4bb navigationCCP4bb <-- 2008 <-- April 2008 <-- 30 April 2008 |
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