[ccp4bb] protein-protein docking programs

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

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   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: How to obtain an oca file?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-05-02

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Subject: model bias: phaser + prime-and-switch VS simulated annealing in phenix VS simulated annealing in cns + prime and switch
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2008-05-02

Subject: protein-protein docking programs
From: Jerry McCully for-crystallizaiton {- at -} HOTMAIL {- dot -} COM
Date: 2008-05-02

Hi, All:

Recently we solved a complex structure between two proteins, which indicated the interaction was kind of
rigid.

Therefore we want to test the binding mode of the receptor with another homologous ligand(very similar structure, RMSD 2.4 angstrom).

Can somebody recommend a sophisticated docking program to do this?

Thanks a lot.

Jerry McCully

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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: How to obtain an oca file?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-05-02