Re: [ccp4bb] sa omit map

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: sa omit map
From: Raja Dey deyraja1 {- at -} YAHOO {- dot -} CO {- dot -} IN
Date: 2008-05-02

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Subject: Re: protein-protein docking programs
From: Ronan Keegan r {- dot -} m {- dot -} keegan {- at -} DL {- dot -} AC {- dot -} UK
Date: 2008-05-02

Subject: Re: sa omit map
From: Raji Edayathumangalam redayath {- at -} MAIL {- dot -} ROCKEFELLER {- dot -} EDU
Date: 2008-05-02

To me, it seems that your syntax for chain and residue definitions is incorrect.

See the 'Tutorial' section on the CNS website, which gives some very nice examples.

For example, if you want to select chain K and residues 2 and 15, chain L and residues 1, 2, and
14, and so on, here's pne possible syntax:
((segid K and resid 12) or (segid K and resid 15) or (segid L and resid 1) or (segid L and resid
2)....blah blah)

Make sure to keep track of the opening and closing parentheses.

Hope that helps.
Raji

---------Included Message----------
>Date: 2-may-2008 12:56:39 -0400
>From: "Raja Dey"
>To:
>Subject: [ccp4bb] sa_omit_map
>
>Hi,
> I am trying to omit some residues from 4 chains to calculate sa_omit_map.map. How I should
declare the command in the inp file? See the error below.
>
> %CNSsolve-ERR: unrecognized command:
> ident ( store8 ) ( byresidue ( ( segid K and resid 2, 15 or segid L and resid 1, 2, 14 or segid
C and resid 2, 3, 15 or segid D and resid 1, 2 )
>Thanks for your help.... Raja
>
>
> Meet people who discuss and share your passions. Go to
http://in.promos.yahoo.com/groups/bestofyahoo/
>
---------End of Included Message----------

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: sa omit map
From: Raja Dey deyraja1 {- at -} YAHOO {- dot -} CO {- dot -} IN
Date: 2008-05-02

Next message:
Subject: Re: protein-protein docking programs
From: Ronan Keegan r {- dot -} m {- dot -} keegan {- at -} DL {- dot -} AC {- dot -} UK
Date: 2008-05-02