Re: [ccp4bb] HKL2000 and gcc4

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CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

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Subject: negative LLG in Phaser run
From: "Oganesyan, Vaheh" OganesyanV {- at -} MEDIMMUNE {- dot -} COM
Date: 2008-05-05

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Subject: Re: HKL2000 and gcc4
From: Michael Strickler michael {- dot -} strickler {- at -} YALE {- dot -} EDU
Date: 2008-05-05

Subject: Re: HKL2000 and gcc4
From: Sabuj Pattanayek sabuj {- dot -} pattanayek {- at -} VANDERBILT {- dot -} EDU
Date: 2008-05-05

Hi,

> Have you installed the compatibility libraries compat-libstdc++-33 and
> libstdc++296? This is easily accomplished using yum if it is installed,
> e.g.,
>
> $ yum -y install compat-libstdc++-33 compat-libstdc++-296
>
> These libraries are required for programs compiled using GCC 3.x

Those packages don't provide libg2c but they are good to have. You need
"yum install compat-libf2c-34" for libg2c.so.0 assuming you're using
RHEL5 or greater. In any case, we're using v0.98.698d and it doesn't
seem to need libg2c:

% ldd `which hkl2000`

linux-gate.so.1 => (0x40000000)
libX11.so.6 => /usr/lib/libX11.so.6 (0x00ada000)
libm.so.6 => /lib/libm.so.6 (0x00a70000)
libdl.so.2 => /lib/libdl.so.2 (0x00a99000)
libc.so.6 => /lib/libc.so.6 (0x0092e000)
libXau.so.6 => /usr/lib/libXau.so.6 (0x00acd000)
libXdmcp.so.6 => /usr/lib/libXdmcp.so.6 (0x00ad2000)
/lib/ld-linux.so.2 (0x0090d000)

which version of HKL2000 are you using that requires libg2c?

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CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

Previous message:
Subject: negative LLG in Phaser run
From: "Oganesyan, Vaheh" OganesyanV {- at -} MEDIMMUNE {- dot -} COM
Date: 2008-05-05

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Subject: Re: HKL2000 and gcc4
From: Michael Strickler michael {- dot -} strickler {- at -} YALE {- dot -} EDU
Date: 2008-05-05