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Re: [ccp4bb] Graphics software to show epitope foot-print
 

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CCP4bb <-- 2008 <-- May 2008 <-- 14 May 2008
Previous message:
Subject: Alternate Ligand Conformations
From: Kathleen Frey kathleen {- dot -} frey {- at -} GMAIL {- dot -} COM
Date: 2008-05-14 		Next message:
Subject: Re: Alternate Ligand Conformations
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-05-14


Subject: Re: Graphics software to show epitope foot-print
From: "ANSV (Anders Svensson)" ansv {- at -} NOVONORDISK {- dot -} COM
Date: 2008-05-14
Hi Liz,

Yes, that's a smart solution. I will have a try on my own data.
Many thanks.

Anders

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
Liz Potterton
Sent: 14. maj 2008 14:10
To: CCP4BB@JISCMAIL.AC.UK
Subject: Re: [ccp4bb] Graphics software to show epitope foot-print

Hi Anders and CCP4bb

Would something like

http://www.ysbl.york.ac.uk/~ccp4mg/index_info_5.html

(done with CCP4mg) be useful? In that image the molecule surface is
coloured by electrostatics (but could be any other property) and the
contact area to a ligand is indicated by dots on the surface.

Liz


On Wednesday 14 May 2008 08:34, ANSV (Anders Svensson) wrote:
> Dear colleagues,
>
> I am looking for a graphics software program that can make the
> following, easily. Make a surface representation of a macromolecule.
> That surface should be coloured according to some property. On, or
> close to, that surface the outer rim of a binding epitope from a
> second molecule should be indicated by a line or string, a foot-print
> representation, without altering the original colouring of the
surface.
>
> Unfortunately I can not find out any program that can make it easily,
> or have not understood all features of the programs. Can anyone help?
>
> Kind regards
> Anders Svensson
>
> __________________________________
>
> Anders Svensson
> Novo Nordisk A/S
> Denmark

CCP4bb navigation

CCP4bb <-- 2008 <-- May 2008 <-- 14 May 2008
Previous message:
Subject: Alternate Ligand Conformations
From: Kathleen Frey kathleen {- dot -} frey {- at -} GMAIL {- dot -} COM
Date: 2008-05-14 		Next message:
Subject: Re: Alternate Ligand Conformations
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-05-14


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