[ccp4bb] Stretching Modelled B-DNA

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CCP4bb <-- 2007 <-- April 2007 <-- 10 April 2007

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Subject: Re: Post facto fix to R-free selection
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-04-10

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From: John Bruning jbruning {- at -} SCRIPPS {- dot -} EDU
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Subject: Stretching Modelled B-DNA
From: Balvinder Dhaliwal balvinder {- dot -} dhaliwal {- at -} GMAIL {- dot -} COM
Date: 2007-04-10

Dear CCP4bbers,

I am trying to find a program that enables the user to vary the pitch of
the generated output model of dsDNA.

I have found several programs that generate a dsDNA .pdb file given an
input sequence (random in my case), and a web server that allows 'curvature'
analysis of the output DNA (http://hydra.icgeb.trieste.it/dna/). However, I
am unable to find a program that allows the pitch of the dsDNA to be varied.
I was wondering if such a program exists? And if so, where can it be found?

Thanks,

Balvinder
Dhaliwal.

Department of Biochemistry and Molecular Biology, Baylor College of
Medicine, Houston, Tx.

CCP4bb navigation

CCP4bb <-- 2007 <-- April 2007 <-- 10 April 2007

Previous message:
Subject: Re: Post facto fix to R-free selection
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-04-10

Next message:
Subject: SAD question
From: John Bruning jbruning {- at -} SCRIPPS {- dot -} EDU
Date: 2007-04-10