[ccp4bb] Binding pocket volume

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: AW: antibody refinement in REFMAC with Kabat numbering
From: Herman {- dot -} Schreuder {- at -} SANOFI-AVENTIS {- dot -} COM Herman {- dot -} Schreuder {- at -} SANOFI-AVENTIS {- dot -} COM
Date: 2007-04-11

Next message:
Subject: Re: AW: antibody refinement in REFMAC with Kabat numbering
From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-04-11

Subject: Binding pocket volume
From: Yingjie Peng yjpeng {- at -} SIBS {- dot -} AC {- dot -} CN
Date: 2007-04-11

Dear all,

Is there anyone who can tell me how to calculate the volume of substrate
binding pocket in a protein structure? I want to use it to the quantify the
conformational change caused by induced fitting. Thanks very much.

Yingjie Peng

Yingjie PENG, Ph.D. student
Structural Biology Group
Shanghai Institute of Biochemistry and Cell Biology (SIBCB)
Shanghai Institute of Biological Sciences (SIBS)
Chinese Academy of Sciences (CAS)
320 Yue Yang Road, Shanghai 200031
P. R. China
86-21-54921217
Email: yjpeng@sibs.ac.cn

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Next message:
Subject: Re: AW: antibody refinement in REFMAC with Kabat numbering
From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-04-11