Re: [ccp4bb] AW: [ccp4bb] antibody refinement in REFMAC with Kabat numbering

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: AW: antibody refinement in REFMAC with Kabat numbering
From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-04-11

Next message:
Subject: Re: Binding pocket volume
From: artis {- at -} CHEMISTRY {- dot -} MONTANA {- dot -} EDU artis {- at -} CHEMISTRY {- dot -} MONTANA {- dot -} EDU
Date: 2007-04-11

Subject: Re: AW: antibody refinement in REFMAC with Kabat numbering
From: Klaas Decanniere kdecanni {- at -} VUB {- dot -} AC {- dot -} BE
Date: 2007-04-11

On Wed, 11 Apr 2007, [ISO-8859-1] "F.Xavier Gomis-Rüth" wrote:

> I fully agree with Hermann due to obvious reasons....
> Xavier

For antibodies there are several numbering schemes in use, or at least
proposed (Kabat, Chothia, AHo, IMGT, ..). So it would be nice to have a
file format that allows several residue numbering schemes at the same
time, with a clever program doing the translations.

I don't know if this is possible in mmCIF. It could be a a nice addition
if it isn't.

Also, Kabat numbering has it's limitations (e.g. how to handle deletions,
or more than 27 inserted residues).

kind regards,

Klaas.

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: AW: antibody refinement in REFMAC with Kabat numbering
From: "F {- dot -} Xavier_Gomis-Rüth" xgrcri {- at -} IBMB {- dot -} CSIC {- dot -} ES
Date: 2007-04-11

Next message:
Subject: Re: Binding pocket volume
From: artis {- at -} CHEMISTRY {- dot -} MONTANA {- dot -} EDU artis {- at -} CHEMISTRY {- dot -} MONTANA {- dot -} EDU
Date: 2007-04-11