Re: [ccp4bb] Calculating apolar/polar surface area

- Protein crystallography

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Subject: Re: Calculating apolar/polar surface area
From: "Ibrahim M {- dot -} Moustafa" I {- dot -} moustafa {- at -} PSU {- dot -} EDU
Date: 2007-04-12

Thanks to those who replied (Heidi and Paul). I tried Popscomp but
it did not give what I want.

I need to get Naccess ( as Heidi mentioned) it should do the job.

thanks,
Ibrahim

At 12:28 PM 4/12/2007, Ibrahim M. Moustafa wrote:
>Hi All,
>
> I'm using Areamol to calculate the ASA. I'm interested to know
> the polar and apolar fractions of the calculated buried ASA between
> two proteins.
> I wonder if there is an available program/server able to do so. I
> googled to find anything to give me that particular information but
> without success.
>
> thanks in advance for your help,
>
> Ibrahim
>Ibrahim M.Moustafa, Ph.D.
>Pennsylvania State University
>Biochemistry & Molecular Biology Dept.
>201 Althouse Lab.
>University Park, PA16802
>
>Tel (814) 863 8703
>Fax (814) 865 7927

Ibrahim M.Moustafa, Ph.D.
Pennsylvania State University
Biochemistry & Molecular Biology Dept.
201 Althouse Lab.
University Park, PA16802

Tel (814) 863 8703
Fax (814) 865 7927

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: ipmosflm centos4.4 mouse enlarge doesn't work
From: Peter Adrian Meyer pam52 {- at -} CORNELL {- dot -} EDU
Date: 2007-04-12

Next message:
Subject: Re: : Crystallographic Programs on AMD computers
From: "Edward A {- dot -} Berry" EABerry {- at -} LBL {- dot -} GOV
Date: 2007-04-12