Re: [ccp4bb] Using DM for density averaging.

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Subject: Using DM for density averaging.
From: ANDY DODDS andy {- dot -} dodds6 {- at -} GOOGLEMAIL {- dot -} COM
Date: 2008-06-03

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Date: 2008-06-03

Subject: Re: Using DM for density averaging.
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-06-03

Hi!

There are detailed instructions with screenshots on the CCP4 wiki page
on NCS averaging with DM, here:
http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=Phase_improvement_by_NCS_averaging_with_DM

You want the section:
Determining the NCS operators using a partial model

Go through that step by step, and if you have any further questions,
mail me your superpose and dm log file and I'll clarify anything I can.

Kevin

ANDY DODDS wrote:
> Hello,
>
> I have a dimer with ligands present in the binding sites (1 per
> monomer). The electron density in one of the monomers is pretty poor
> compared to the other, so I was hoping to use DM to try and average the
> densities.
>
> I am having problems telling DM the NCS operators. How would you go
> about doing this?
>
> Any help would be appreciated,
>
> Andy
>
>
>

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CCP4bb <-- 2008 <-- June 2008 <-- 03 June 2008

Previous message:
Subject: Using DM for density averaging.
From: ANDY DODDS andy {- dot -} dodds6 {- at -} GOOGLEMAIL {- dot -} COM
Date: 2008-06-03

Next message:
Subject: Multimer threading server
From: Andrew Torelli andrew_torelli {- at -} URMC {- dot -} ROCHESTER {- dot -} EDU
Date: 2008-06-03