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[ccp4bb] Multimer threading server
 

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CCP4bb <-- 2008 <-- June 2008 <-- 03 June 2008
Previous message:
Subject: Re: Using DM for density averaging.
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-06-03 		Next message:
Subject: Re: Multimer threading server
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2008-06-03


Subject: Multimer threading server
From: Andrew Torelli andrew_torelli {- at -} URMC {- dot -} ROCHESTER {- dot -} EDU
Date: 2008-06-03
To the CCP4 community,

I have a sequence that I would like to model by threading onto each subunit of a homo-tetramer of a related protein (crystal structure). It doesn't work to thread each subunit individually and then 'recombine' the homodimer as a single PDB because the interfaces suffer from clashes and overlaps. Does anyone know of a server that can peform multimer threading based on a sequence and a multimeric crystal structure?

Thank you for the advice,
Best Regards,
-Andy Torelli

CCP4bb navigation

CCP4bb <-- 2008 <-- June 2008 <-- 03 June 2008
Previous message:
Subject: Re: Using DM for density averaging.
From: Kevin Cowtan cowtan {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-06-03 		Next message:
Subject: Re: Multimer threading server
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2008-06-03


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