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Re: [ccp4bb] B factor calculation |
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- Protein crystallographyMain steps:- Protein purification- Crystallisation Special:- Programs for crystallography- X-ray detectors Basic tutorials:- Chemistry- Protein - Peptide - Amino Acids Xtal community:- CCP4BB |
CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999Subject: Re: B factor calculation From: Pavel Afonine PAfonine {- at -} LBL {- dot -} GOV Date: 2008-06-04 For example, this will show you complete statistics about B-factors: phenix.pbdtools your_model.pdb --show-adp-statistics this will show you complete statistics about stereochemistry: phenix.pbdtools your_model.pdb --show-geometry-statistics For more information: http://www.phenix-online.org/ or ask me directly. Cheers, Pavel. On 6/4/2008 12:40 PM, xu zhen wrote: > Hi, everyone, > > I am preparing the table of data collection and refinement statics. In this table, I need to list the average B factor of protein, ligand and water seperately, can you tell me how to calculate thoes numbers? > > Zhen > _________________________________________________________________ > News, entertainment and everything you care about at Live.com. Get it now! > http://www.live.com/getstarted.aspx > CCP4bb navigationCCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999 |
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