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[ccp4bb] [Fwd: Re: [ccp4bb] CCP4 & Coot on Ubuntu]
 

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CCP4bb <-- 2008 <-- June 2008 <-- 10 June 2008
Previous message:
Subject: Re: CCP4 & Coot on Ubuntu
From: Kay Diederichs Kay {- dot -} Diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2008-06-10 		Next message:
Subject: Re: CCP4 & Coot on Ubuntu
From: Dirk Kostrewa kostrewa {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-06-10


Subject: [Fwd: Re: CCP4 & Coot on Ubuntu]
From: Martyn Winn m {- dot -} d {- dot -} winn {- at -} DL {- dot -} AC {- dot -} UK
Date: 2008-06-10
I now have Hardy Heron on my EM64T machine, and ccp4 works fine.

For bltwish, I'm still using the version I compiled from source ages
ago, as described on my page. Did you try that?

Martyn

-------- Forwarded Message --------
> From: Tim Gruene
> Reply-To: Tim Gruene
> To: CCP4BB@JISCMAIL.AC.UK
> Subject: Re: [ccp4bb] CCP4 & Coot on Ubuntu
> Date: Tue, 10 Jun 2008 13:33:03 +0200
>
> Hello John,
>
> with Debian and therefore probably also Ubuntu, bltwish is placed within a
> library.
>
> You can install the package blt, but than you have to modify the scripts
> in $CCP4/ccp4i/bin
>
> Try the following:
> cd $CCP4/ccp4i/bin
> grep -l bltwish *
> then edit each file that 'grep' lists and replace 'bltwish' with 'wish'.
> That's worked for me.
>
> As for coot, the script that starts coot (type 'which coot' to find out
> the full path) uses the variables COOT_PREFIX and current_exe_dir.
>
> The top of the coot-script looks something like
>
> >-------------------------------------------
> current_exe_dir=`dirname $0`
> echo current_exe_dir is $current_exe_dir
>
> if [ $current_exe_dir = . ] ; then
> COOT_PREFIX=`dirname $PWD`
> else
> COOT_PREFIX=`dirname "$current_exe_dir"`
> fi
> <------------------------------------------
>
> These lines don't work if the coot-script is placed e.g. in /usr/local/bin
> (at least they don't for me)
>
> remove all those lines and replace them with
> COOT_PREFIX=/path/to/where/coot/is/installed
> current_exe_dir=/path/to/where/coot/is/installed/bin
> that should hopefully work.
>
> Hope this helps, Tim
>
> --
> Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>
> On Tue, 10 Jun 2008, john kryst wrote:
>
> > Dear Tim,
> >
> > Thanks for your reply... i tried installing using RH8 binaries.. that
> > complained about bltwish.. then i tried using the bil's deb package.. but
> > that also doesnt seems to be working... when i sourced the ccp4.setup file
> > and tried the command line... no luck...
> >
> > when i try coot ubuntu-0.6.1 binary... it complains that coo-real command
> > not found and guile not found.. in fact i tried putting set path to check
> > but no luck..
> >
> > I hope i wrote it clear
> >
> > I am a newbie to linux.. pls bare with me if i am asking you very silly
> > things...
> >
> > regards
> > John
> >
> > On Tue, Jun 10, 2008 at 4:34 PM, Tim Gruene wrote:
> >
> >> That sounds as though you have problems installing ccp4. Can you specify
> >> them?
> >> - If you use the precompiled version of ccp4, it should run on 64bit
> >> machines
> >> - if you compiled from source, there should be no problems at
> >> all. What you do need, though, is a number of developer packages so the
> >> header files and libraries required for compilation are found. I
> >> don't know if there is a comprehensive list of developer packages you
> >> need for compilation
> >>
> >> Tim
> >>
> >> --
> >> Tim Gruene
> >> Institut fuer anorganische Chemie
> >> Tammannstr. 4
> >> D-37077 Goettingen
> >>
> >> GPG Key ID = A46BEE1A
> >>
> >>
> >>
> >> On Tue, 10 Jun 2008, john kryst wrote:
> >>
> >> Hi all !!
> >>>
> >>> Sorry for the off topic question. Has anyone tried installing CCP4 and
> >>> coot in Ubuntu Heran Hardy 64 bit... I have been googling and tried the
> >>> suggestions of Bill & Martyn's page... but no success with the amd 64 bit
> >>> machine.. all the instructions i get are for 32bit machines.. Please
> >>> help
> >>> me out...
> >>>
> >>>
> >>> Thanks a lot for your time
> >>>
> >>> regards
> >>> John
> >>>
> >>>
> >
--
***********************************************************************
* *
* Dr. Martyn Winn *
* *
* STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. *
* Tel: +44 1925 603455 E-mail: m.d.winn@dl.ac.uk *
* Fax: +44 1925 603825 Skype name: martyn.winn *
* URL: http://www.ccp4.ac.uk/martyn/ *
***********************************************************************

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CCP4bb <-- 2008 <-- June 2008 <-- 10 June 2008
Previous message:
Subject: Re: CCP4 & Coot on Ubuntu
From: Kay Diederichs Kay {- dot -} Diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2008-06-10 		Next message:
Subject: Re: CCP4 & Coot on Ubuntu
From: Dirk Kostrewa kostrewa {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-06-10


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