Re: [ccp4bb] sequential renumbering of a messed up pdb file

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: sequential renumbering of a messed up pdb file
From: mjvdwoerd {- at -} NETSCAPE {- dot -} NET mjvdwoerd {- at -} NETSCAPE {- dot -} NET
Date: 2008-08-01

Next message:
Subject: Beamline Stability Issues
From: Lucas Sanfelici lsanfelici {- at -} LNLS {- dot -} BR
Date: 2008-08-01

Subject: Re: sequential renumbering of a messed up pdb file
From: Abhinav Kumar abhinavk {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2008-08-01

I have a program that can fix it provided the residues with same
number are not adjacent in the pdb file.
Please let me know and I can send you the program.

Thanks
Abhinav

Abhinav Kumar
JCSG @ SSRL, MS 99
2575 Sand Hill Road
Menlo Park, CA 945025-7015

Phone: 650 926 2992
Fax: 650 926 3292

On Jul 31, 2008, at 4:09 PM, William Scott wrote:

> Hi folks:
>
> I am hoping there is a simple answer I have overlooked to the
> following question. I have a pdb file in it that has multiple
> residues that have the same number and chain ID, and I want to
> force them to be renumbered sequentially. Is there a simple way to
> do so (eg, pdbset) or am I doomed to fixing it manually?
>
> Thanks.
>
> Bill Scott
>
>
> William G. Scott
>
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: sequential renumbering of a messed up pdb file
From: mjvdwoerd {- at -} NETSCAPE {- dot -} NET mjvdwoerd {- at -} NETSCAPE {- dot -} NET
Date: 2008-08-01

Next message:
Subject: Beamline Stability Issues
From: Lucas Sanfelici lsanfelici {- at -} LNLS {- dot -} BR
Date: 2008-08-01