Re: [ccp4bb] D-Amino acids to L-Amino acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: D-Amino acids to L-Amino acids
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2008-08-02

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Subject: Re: D-Amino acids to L-Amino acids
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2008-08-02

Subject: Re: D-Amino acids to L-Amino acids
From: Lijun Liu liulj {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2008-08-02

Did you set the weight (X-ray.vs.Geom.) too high? In principle, at
3A a relatively smaller weight than default (0.3?) may be used.

On Aug 2, 2008, at 8:39 AM, Yusuf Akhter wrote:

> Hi Everybody,
>
> I am refining structure of a protein at 3 Angstrom. I am doing
> model building in
> Coot.
> After several rounds of refinement using Refmac when I tried to run
> PROCHECK on
> my partially build model I found that some of the residues are D-
> amino acids.
>
> How to change these D-amino acids to L-amino acids??
>
> Is there any option in Coot for that??
>
>
> Thanks in advance,
> yusuf
>
> --
> Yusuf Akhter
> EMBL Hamburg c/o DESY, Notkestraße 85,
> 22603 Hamburg, Germany
>
>
> -------------------------------------------------
> This mail sent through IMP: http://horde.org/imp/

Lijun Liu, PhD
Institute of Molecular Biology
HHMI & Department of Physics
University of Oregon
Eugene, OR 97403
541-346-4080

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: D-Amino acids to L-Amino acids
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2008-08-02

Next message:
Subject: Re: D-Amino acids to L-Amino acids
From: Dale Tronrud det102 {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2008-08-02