Re: [ccp4bb] sequential renumbering of a messed up pdb file

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: "Borhani, David" David {- dot -} Borhani {- at -} DESHAWRESEARCH {- dot -} COM
Date: 2008-08-04

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Date: 2008-08-04

Subject: Re: sequential renumbering of a messed up pdb file
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-08-04

It is an absolute pain!

do you mean you have residue 1 A 1A 2A 2A 3A 3A etc where they should be
numbered 1 2 3 4 5 6 A?
or should it be 1A 1B 2A 2B 3A 3B etc?

Eleanor

William Scott wrote:
> Hi folks:
>
> I am hoping there is a simple answer I have overlooked to the
> following question. I have a pdb file in it that has multiple
> residues that have the same number and chain ID, and I want to force
> them to be renumbered sequentially. Is there a simple way to do so
> (eg, pdbset) or am I doomed to fixing it manually?
>
> Thanks.
>
> Bill Scott
>
>
> William G. Scott
>
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Rotation axis
From: "Borhani, David" David {- dot -} Borhani {- at -} DESHAWRESEARCH {- dot -} COM
Date: 2008-08-04

Next message:
Subject: R-axis HTC set of images
From: Andrew Leslie andrew {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2008-08-04