[ccp4bb] Refmac out-put file header information

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: problem running DISTANG
From: Adam Ralph aralph {- at -} MATHS {- dot -} NUIM {- dot -} IE
Date: 2008-08-07

Next message:
Subject: Re: Change reflection file names
From: Juergen Bosch jbosch {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2008-08-07

Subject: Refmac out-put file header information
From: Yusuf Akhter yusuf {- at -} EMBL-HAMBURG {- dot -} DE
Date: 2008-08-07

Thank you very much to Artem, Lijun, Dale and Paul for giving me great
suggestions regarding my earlier query on D to L amino acid residues.

Now one more problem is in same 3 A structure refinement. For those who not
remembered my case. I have processed a diffraction data-set at 3 A using XDS. I
am using Refmac for refinement. My data is 95.4% of completeness at Signal/noise
>=-3.

I noticed that in the header of out-put PDB file from Refmac shows 100%
completeness.

Is it a bug?? May somebody tell me where the problem is?

Thanks in advance.

yusuf

--
Yusuf Akhter
EMBL Hamburg c/o DESY, Notkestraße 85,
22603 Hamburg, Germany

Quoting Yusuf Akhter :

> Hi Everybody,
>
> I am refining structure of a protein at 3 Angstrom. I am doing model building
> in
> Coot.
> After several rounds of refinement using Refmac when I tried to run PROCHECK
> on
> my partially build model I found that some of the residues are D-amino
> acids.
>
> How to change these D-amino acids to L-amino acids??
>
> Is there any option in Coot for that??
>
>
> Thanks in advance,
> yusuf
>
> --
> Yusuf Akhter
> EMBL Hamburg c/o DESY, Notkestraße 85,
> 22603 Hamburg, Germany
>

-------------------------------------------------
This mail sent through IMP: http://horde.org/imp/

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: problem running DISTANG
From: Adam Ralph aralph {- at -} MATHS {- dot -} NUIM {- dot -} IE
Date: 2008-08-07

Next message:
Subject: Re: Change reflection file names
From: Juergen Bosch jbosch {- at -} U {- dot -} WASHINGTON {- dot -} EDU
Date: 2008-08-07