Re: [ccp4bb] CCP4i on MacPro under Leopard

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: comparing interfaces
From: Jayashankar s {- dot -} jayashankar {- at -} GMAIL {- dot -} COM
Date: 2008-08-25

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From: Christian Biertuempfel biertumpfelc {- at -} NIDDK {- dot -} NIH {- dot -} GOV
Date: 2008-08-25

Subject: Re: CCP4i on MacPro under Leopard
From: "William G {- dot -} Scott" wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-08-25

Under 10.5.X, sudo doesn't inherit the environment. So the best thing
to do is start a root process like this:

/bin/bash

(or /bin/zsh or /bin/tcsh )

source /usr/local/ccp4-6.0.2/include/ccp4.setup-bash

(or whatever it is for your shell)

Then issue ccp4i

William G. Scott

Contact info:
http://chemistry.ucsc.edu/~wgscott/

On Aug 25, 2008, at 6:05 AM, Anita Bentley wrote:

> My faithful old Mac G5 siezed up and I have to use a brand new
> MacBook Pro from now on. It's an Intel machine with Leopard.
>
> I managed to install CCP4 together with TLK/BLK programmes. After a
> long while searching for bltwish routines I discovered that they are
> automatically installed in /usr/local/bin and not in /sw/bin as
> suggested in the ccp4 setup files (!). With this problem sorted out,
> I was able to start ccp4i GUI fine.
> I get the message that "I am the first person to run this
> version ... and should get the right person to configure the
> interface ...". However, when I try to run ccp4i with "sudo" in
> order to have the priviledges to configure it, I am unable to run it:
>
> "macbookpro-bentley 7% sudo ccp4i
> /usr/local/ccp4-6.0.2/bin/ccp4i: line 4: /bltwish: No such file or
> directory
> /usr/local/ccp4-6.0.2/bin/ccp4i: line 4: exec: /bltwish: cannot
> execute: No such file or directory"
>
> I've modified the -sh and -csh files (I have a one-line login.com
> to get me under csh as user) to no avail. What do I have to do to be
> able to configure the interface???
>
> The underlying problem is that I cannot run REFMAC in the present
> state of things, I get the following error:
> "Error from script
> /usr/local/ccp4-6.0.2/share/ccp4i/scripts/refmac5.script: can't read
> "cell": no such variable"
> which makes me think the configuration of the interface is not quite
> right.
>
> Any help is greatly appreciated!
>
> Anita
>
>
>
>
> Anita Lewit-Bentley
> LBPA
> Ecole Normale Supérieure de Cachan
> 61, avenue du Président Wilson
> 94235 Cachan cedex
> FRANCE
>
> tel: 33-(0)1-47 40 76 65
> fax: 33-(0)1 47 40 76 71
> e-mail: anita.bentley@lbpa.ens-cachan.fr
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: comparing interfaces
From: Jayashankar s {- dot -} jayashankar {- at -} GMAIL {- dot -} COM
Date: 2008-08-25

Next message:
Subject: Re: protein degradation
From: Christian Biertuempfel biertumpfelc {- at -} NIDDK {- dot -} NIH {- dot -} GOV
Date: 2008-08-25