Re: [ccp4bb] how to present the surface of a channel

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Tommi Kajander tommi {- dot -} kajander {- at -} HELSINKI {- dot -} FI
Date: 2008-08-28

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Subject: Re: how to present the surface of a channel
From: Karsten Schaefer karsten {- dot -} schaefer {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2008-08-28

Did you try "MOLE" (also available as a PyMOL plugin)?
http://mole.chemi.muni.cz/download.php

Karsten

Jiamu Du wrote:
> Dear all,
> I want to prepare a figure to present the surface of a channel inside of a
> protein as shown in the attached figure.
> I have used the program PASS and PYMOL (with CAVER) to make this figure.
> Both the programs fail to find the channel. But the channel is large enough
> in fact.
> Is there any other program can be used for preparing these figures?
>
> Thanks.
>
>
>
> ------------------------------------------------------------------------
>

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: peptide for co-crystallization
From: Tommi Kajander tommi {- dot -} kajander {- at -} HELSINKI {- dot -} FI
Date: 2008-08-28

Next message:
Subject: Diamond Beamline Robot Survey
From: "McAuley, KE (Katherine)" katherine {- dot -} mcauley {- at -} DIAMOND {- dot -} AC {- dot -} UK
Date: 2008-08-28