Re: [ccp4bb] List of conserved waters

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: SUMMARY List of conserved waters
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-09-01

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Subject: Postdoctoral positions - Birkbeck
From: Gabriel Waksman g {- dot -} waksman {- at -} MAIL {- dot -} CRYST {- dot -} BBK {- dot -} AC {- dot -} UK
Date: 2008-09-01

Subject: Re: List of conserved waters
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-09-01

You can use the ancient but useful watertidy script - that assigns water
names coded according to the residue they are linked to. So ones with
the same link code are related..

But I also use distang.

Make a file with the two or more sets of waters - then do a distance
search with the appropriate water radius.
Eleanor

Thus Tim Gruene wrote:
> Hello,
>
> I am (lazily ;-)) looking for a program that list all conserved waters
> between to structures (after superposition), i.e. all waters between
> both structures within a certain distance cut-off.
>
> Could anyone please point me to a program that does this?
>
> Thanks a lot, Tim
>
> --
> Tim Gruene
> Institut fuer anorganische Chemie
> Tammannstr. 4
> D-37077 Goettingen
>
> GPG Key ID = A46BEE1A
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: SUMMARY List of conserved waters
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-09-01

Next message:
Subject: Postdoctoral positions - Birkbeck
From: Gabriel Waksman g {- dot -} waksman {- at -} MAIL {- dot -} CRYST {- dot -} BBK {- dot -} AC {- dot -} UK
Date: 2008-09-01