[ccp4bb] PDB beta-sheet definition tool wanted

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: log tools for crystallization conditions
From: "S {- dot -} Thiyagarajan" tyahaa {- at -} YAHOO {- dot -} COM
Date: 2008-09-11

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From: Patrick Loll pat {- dot -} loll {- at -} DREXEL {- dot -} EDU
Date: 2008-09-11

Subject: PDB beta-sheet definition tool wanted
From: "Mueller, Juergen-Joachim" jjm {- at -} MDC-BERLIN {- dot -} DE
Date: 2008-09-11

Dear all,
some proteins have complicate beta-sheet structures
(closed sheet,bifurcated sheets ...). Its easy
to determine the strands and sheets with DSSP, HERA ...
but PDB's automatical tool makes numerous mistakes and it takes more time
to correct the pre-deposition file than to sent the correct one.
My question is: Is there a program available which can
do the boring work of registration determination (columns 39-70 in
the beta-sheet cards)?
Thanks in advance,
Jürgen

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: log tools for crystallization conditions
From: "S {- dot -} Thiyagarajan" tyahaa {- at -} YAHOO {- dot -} COM
Date: 2008-09-11

Next message:
Subject: specifying metal ion names in PDB file, part deux
From: Patrick Loll pat {- dot -} loll {- at -} DREXEL {- dot -} EDU
Date: 2008-09-11