Re: [ccp4bb] to extract protein sequence from a rebuilt pdb file

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: to extract protein sequence from a rebuilt pdb file
From: Jane Bailey jbailey {- dot -} xtal {- at -} GOOGLEMAIL {- dot -} COM
Date: 2008-10-01

Next message:
Subject: Re: Anomalous correlation plot in scala
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2008-10-01

Subject: Re: to extract protein sequence from a rebuilt pdb file
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2008-10-01

echo "sequence single"
pdbset xyzin rebuilt.pdb sequence rebuilt.seq

On 1 Oct 2008, at 09:40, Jane Bailey wrote:

> Hi, all
>
> I am currently rebuilting my structure in coot, and the protein
> sequence is around 98% rebuilt yet. I am looking for a way to
> extract protein sequence from the rebuilt.pdb so that I could see
> clearly which part need to be rebuilt by sequence alignment. Any
> ideas about this? thanks
>
> Best
> Jane

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: to extract protein sequence from a rebuilt pdb file
From: Jane Bailey jbailey {- dot -} xtal {- at -} GOOGLEMAIL {- dot -} COM
Date: 2008-10-01

Next message:
Subject: Re: Anomalous correlation plot in scala
From: Phil Evans pre {- at -} MRC-LMB {- dot -} CAM {- dot -} AC {- dot -} UK
Date: 2008-10-01