Re: [ccp4bb] pymol cartoon problem

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: Crystals grown from high ammonium sulphate
From: "Mark J {- dot -} van Raaij" mark {- dot -} vanraaij {- at -} USC {- dot -} ES
Date: 2008-11-04

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Date: 2008-11-04

Subject: Re: pymol cartoon problem
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-11-04

Pramod,

PyMOL is sensitive to residue numbering...

set retain_order

rebuild

may help.

Cheers,

Warren

P.S. The PyMOL mailing list can be found at:

http://sourceforge.net/mail/?group_id=4546

________________________________

From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of
pramod madoori
Sent: Tuesday, November 04, 2008 5:03 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] pymol cartoon problem

Dear All,

I have a simple but unresolved problem when representing one of my
structure in cartoon mode using Pymol. One of the bond between Trp and
Gly in loop region is represented well in coot as well as other
molecular viewing softwares (Rasmol and Molscript). When I tried to
represent the same in pymol it shows a break at the same position during
cartoon representation and wire representation and not when in lines
representation. For your observation I am forwarding the images of those
regions from coot (with ED map) and pymol. Does any body had this
problem before and any solutions to circumvent this?

Thanking you
Pramod Kumar

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Crystals grown from high ammonium sulphate
From: "Mark J {- dot -} van Raaij" mark {- dot -} vanraaij {- at -} USC {- dot -} ES
Date: 2008-11-04

Next message:
Subject: Re: ccp4 6.0.99e test release
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2008-11-04