Re: [ccp4bb] ccp4 6.0.99e test release

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

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   - Protein
   - Peptide
   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-11-04

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Date: 2008-11-05

Subject: Re: ccp4 6.0.99e test release
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2008-11-04

Hello ccp4-ers
I have been happily running ccp4-6.0.99e, which I self compiled on an
Ubuntu 64bit ( Version 8.04) box

Things have been going smoothly till I noticed a segmentation fault when I
tried to get a postscript file using xplot84driver .
The binary run from a shell and the ccp4i gui give the following error

FROM SHELL
hari@charlie:~/ccp4-6.0.99e/x-windows/XCCPJIFFY$ ./xplot84driver
~/yjchotmp/yjchotmp_2_1.plt
Warning: Representation size 1 must match superclass's to override
useStringInPlace
Segmentation fault

FROM CCP4 GUI
hari@charlie:~$ Warning: Representation size 1 must match superclass's to
override useStringInPlace

Any ideas on how to overcome this

I am attaching the Makefile I used to compile this xplot84driver binary on
my system
Thank you for your help
Hari

On Fri, Jul 25, 2008 at 11:54 AM, Martyn Winn wrote:

> Dear All
>
> the latest test version is on the ccp4 ftp server.
>
> ftp://ftp.ccp4.ac.uk/ccp4/6.1/ccp4-6.0.99e-core-src.tar.gz <- core
> ccp4, rapper, clipper
> ftp://ftp.ccp4.ac.uk/ccp4/6.1/ccp4-6.0.99e-phaser-src.tar.gz <- cctbx and
> phaser
> ftp://ftp.ccp4.ac.uk/ccp4/6.1/ccp4-6.0.99e-balbes_db.tar.gz <- balbes
> database only
>
> There is also the dependency of PyXML if you want to run balbes
> ftp://ftp.ccp4.ac.uk/ccp4/6.1/ccp4-6.0.99e-PyXML.tar.gz
>
> for the first 3 tarballs unpack into the same directory, then
> configure...make...make install.
> For the PyXML, follow the instructions in the PyXML-0.8.4 directory.
>
> Major changes:
> refmac5.5 built by default. This gives twinning and sad refinement.
> dbhandler. Many optimisations, so this should be much more responsive.
>
> For other updates see the CHANGES file.
>
> Still to come:
> downloads pages (under internal testing).
> documentation updates (lots of)
>
> Feedback to the usual locale (ccp4@dl.ac.uk)
>
> Thanks
>
> Charles and the rest of us here at DL.
>
>
> --
> ***********************************************************************
> * *
> * Dr. Martyn Winn *
> * *
> * STFC Daresbury Laboratory, Daresbury, Warrington, WA4 4AD, U.K. *
> * Tel: +44 1925 603455 E-mail: m.d.winn@dl.ac.uk *
> * Fax: +44 1925 603825 Skype name: martyn.winn *
> * URL: http://www.ccp4.ac.uk/martyn/ *
> ***********************************************************************
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: pymol cartoon problem
From: Warren DeLano warren {- at -} DELSCI {- dot -} COM
Date: 2008-11-04

Next message:
Subject: summary: tricoordinate ion?
From: Sebastiano Pasqualato sebastiano {- dot -} pasqualato {- at -} IFOM-IEO-CAMPUS {- dot -} IT
Date: 2008-11-05