Re: [ccp4bb] hydrophobic surface representation

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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Subject: Re: hydrophobic surface representation
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-11-06

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Date: 2008-11-06

Subject: Re: hydrophobic surface representation
From: Madhumati Sevvana msevvana {- at -} BIOLOGIE {- dot -} UNI-ERLANGEN {- dot -} DE
Date: 2008-11-06

Hi!
To my knowledge one could use the program GRID available on
http://www.moldiscovery.com/soft_grid.php to calculate the hydrophobic
molecular-interaction field on the surface of the protein. But I guess
it comes with a small license fee for academic users.
Best Regards,
Madhu

Sebastiano Pasqualato wrote:
> Hi all,
> I'd love to have a surface representation of my structure in which I
> plot the hydrophobic exposed residues.
> A bit like an electrostatic potential plotted onto the surface, but
> rather than hydrophilic, an hydrophobic one.
> Is there a nice web server or a program that does that or you guys
> just color hydrophobic amino acids and show the surface?
> Thanks in advance,
> s
>
>

--
---------------------------------------------------------------
Madhumati Sevvana, PhD
Lehrstuhl fuer Biotechnik (Im IZMP)
Friedrich-Alexander-Universitaet
Henkestr. 91, D-91052
Erlangen, Germany

Email msevvana@biologie.uni-erlangen.de
Phone +49 (0)9131 85 23083
Fax +49 (0)9131 85 23080
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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: hydrophobic surface representation
From: Tim Gruene tg {- at -} SHELX {- dot -} UNI-AC {- dot -} GWDG {- dot -} DE
Date: 2008-11-06

Next message:
Subject: Re: sugar ligand refinement in coot
From: junfeng liu jliu {- at -} NIMR {- dot -} MRC {- dot -} AC {- dot -} UK
Date: 2008-11-06