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Re: [ccp4bb] Channel inside a protein
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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: Re: Channel inside a protein
From: hari jayaram harijay {- at -} GMAIL {- dot -} COM
Date: 2008-11-10		Next message:
Subject: Re: Channel inside a protein
From: Hector H Hernandez hectorh {- at -} MIT {- dot -} EDU
Date: 2008-11-10


Subject: Re: Channel inside a protein
From: Jim Fairman fairman {- dot -} jim {- at -} GMAIL {- dot -} COM
Date: 2008-11-10

Priya,

We have used a program called CAVER to find channels and cavities in our
protein. You can download it and get instructions on its use at
http://loschmidt.chemi.muni.cz/caver/

On Mon, Nov 10, 2008 at 10:21 AM, hari jayaram wrote:

> Hi Priya ,
>
> I would recommend MOLE from the list kindly compiled by "Jiamudu" on the
> CCP4 wikiThe list is available at the link below
>
>
> http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Programs_for_representing_the_surface_of_a_channel_inside_protein
>
>
> Hari
>
>
> On Mon, Nov 10, 2008 at 9:16 AM, Priya Mudgal wrote:
>
>> Hello All,
>>
>> Is there any program that can find if there is a channel inside a protein?
>> I also would like to know what are the alternative ways to find out a
>> channel inside a protein.
>>
>> Thanks a lot.
>>
>> Priya
>>
>
>


--
Jim Fairman
Graduate Research Assistant
Department of Biochemistry, Cellular, and Molecular Biology (BCMB)
University of Tennessee -- Knoxville
216-368-3337 jfairman@utk.edu james.fairman@case.edu
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