Re: [ccp4bb] Channel inside a protein

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

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   - Peptide
   - Amino Acids

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Channel inside a protein
From: Jim Fairman fairman {- dot -} jim {- at -} GMAIL {- dot -} COM
Date: 2008-11-10

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Subject: Re: Channel inside a protein
From: "Bossi, Roberto [Nervianoms]" Roberto {- dot -} Bossi {- at -} NERVIANOMS {- dot -} COM
Date: 2008-11-10

Subject: Re: Channel inside a protein
From: Hector H Hernandez hectorh {- at -} MIT {- dot -} EDU
Date: 2008-11-10

Hello Priya,

Here is a great example of the identification of a channel in a
protein. The authors used CAVENV to identify the channel and
confirmed the channel by solving the structure of Xenon-pressured
crystals.

Hector

Xenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide
Dehydrogenase/Acetyl-CoA Synthase
Tzanko I. Doukov, Leah C. Blasiak, Javier Seravalli, Stephen W.
Ragsdale, and Catherine L. Drennan

http://pubs.acs.org/cgi-bin/abstract.cgi/bichaw/2008/47/i11/abs/bi702386t.html

Hector H Hernandez, PhD
Massachusetts Institute of Technology
Civil and Environmental Engineering
Postdoctoral Associate

hectorh@mit.edu

On Nov 10, 2008, at 10:21 AM, hari jayaram wrote:

> Hi Priya ,
>
> I would recommend MOLE from the list kindly compiled by "Jiamudu" on
> the CCP4 wiki
> The list is available at the link below
> http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Programs_for_representing_the_surface_of_a_channel_inside_protein
>
>
> Hari
>
>
> On Mon, Nov 10, 2008 at 9:16 AM, Priya Mudgal
> > wrote:
> Hello All,
>
> Is there any program that can find if there is a channel inside a
> protein?
> I also would like to know what are the alternative ways to find out
> a channel inside a protein.
>
> Thanks a lot.
>
> Priya
>

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: Channel inside a protein
From: Jim Fairman fairman {- dot -} jim {- at -} GMAIL {- dot -} COM
Date: 2008-11-10

Next message:
Subject: Re: Channel inside a protein
From: "Bossi, Roberto [Nervianoms]" Roberto {- dot -} Bossi {- at -} NERVIANOMS {- dot -} COM
Date: 2008-11-10