Re: [ccp4bb] buried surface area

- Protein crystallography

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- Crystallisation

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CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

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From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-04-30

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Subject: Re: buried surface area
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-04-30

I use PISA - it tells you lots of things and I think will do this as well

http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html

You can download your coordinates.. Will need to name subunits A and B
or something I think..

Eleanor

Gloria Borgstahl wrote:
> Hello all,
> What is the easiest way, these days, to calculate the buried surface area
> between two subunits of a protein?
> Thanks, and Happy Friday, Gloria
> ******************************************************************************
> Gloria Borgstahl
> Eppley Institute for Cancer Research and Allied Diseases
> 987696 Nebraska Medical Center
> 10732A Lied Transplant Center
> Omaha, NE 68198-7696
>
> http://sbl.unmc.edu
> Office (402) 559-8578
> FAX (402) 559-3739
>
> Associate Professor
> Interests: Cancer, Biochemistry, DNA Metabolism, Protein Crystallography,
> Modulated Crystals, Crystal Perfection, X-ray Topography,
> Varley, Rowling, Avatar, BRAN, RAGBRAI, swimming & soccer
> ******************************************************************************

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: Re: NCS-averaged composite omit map?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-04-30

Next message:
Subject: Postdoc position in Korea (Samsung Biomedical Research Institute)
From: Kyeong Kyu Kim kkim {- at -} MED {- dot -} SKKU {- dot -} AC {- dot -} KR
Date: 2007-04-30