Quick navigation: Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |    Advert   |   
 

Re: [ccp4bb] meaning of R free of perfect twin

- Protein crystallography

Main steps:

   - Protein purification
   - Crystallisation

Special:

   - Programs for crystallography
   - X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

   - CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: License
From: Felix Frolow mbfrolow {- at -} POST {- dot -} TAU {- dot -} AC {- dot -} IL
Date: 2008-12-11
Next message:
Subject: Re: Summary - torsion angle restraints in REFMAC
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2008-12-11


Subject: Re: meaning of R free of perfect twin
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-12-11

you need to select the Free R in the highest possible Laue group , then
use cad to extend this to all reflections in the chosen point group.
This is best done immediately post-truncate..

eg if you twinning operator is k,h,-l, then if
1,2, 3 is assigned to the free set so should 2, 1, -3 be.

PHENIX.xtriage does it properly

REFMAC does not use it properly I dont think, but maybe that has been
fixed..

Eleanor

Serge Cohen wrote:
> -----BEGIN PGP SIGNED MESSAGE-----
> Hash: SHA1
>
> I guess the independence is mostly depending on how you select the
> reflection that lie in the free-set.
>
> If (from the beginning) you select reflections that are related by the
> twin operator to be both in the free-set you keep the "independence"
> of the free-set.
>
> Serge.
>
> Le 5 déc. 08 à 13:50, Agnieszka Kiliszek a écrit :
>
>> Hi,
>>
>> What is the meaning of R free of perfect twin? Shelxl counts it but it
>> seems that the R f is no longer independent.
>>
>> Aga
>
> -----BEGIN PGP SIGNATURE-----
> Version: GnuPG v1.4.8 (Darwin)
>
> iEYEARECAAYFAkk5KCgACgkQlz6UVQtc2uy09ACg69gIYn0Lc1e2tSRzoi1EJOe9
> g/gAoOplij/XAxmGoZaNjFjAUx/etD/1
> =QpB8
> -----END PGP SIGNATURE-----
>
>
>

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999
Previous message:
Subject: License
From: Felix Frolow mbfrolow {- at -} POST {- dot -} TAU {- dot -} AC {- dot -} IL
Date: 2008-12-11
Next message:
Subject: Re: Summary - torsion angle restraints in REFMAC
From: Artem Evdokimov artem {- at -} XTALS {- dot -} ORG
Date: 2008-12-11



ProteinCrystallography.org: Copyright 2006-2010 by Quid United Ltd